View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_low_3 (Length: 581)
Name: NF7447_low_3
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_low_3 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Original strand, 6867 - 7414
Alignment:
| Q |
19 |
atgctggagagtttggggataaggctaaacatgcggctcaagaaggtggttcatctcataggaatttaacggctgtgatcaatgatcttaaaatatcgag |
118 |
Q |
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| T |
6867 |
atgctcgagagtttggggataaggctaaacatgcggctcaagaaggtggttcatctcataggaatttaacggctgtgatcgatgatcttaaaatattgag |
6966 |
T |
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| Q |
119 |
ggaccgcaaacttctagtttaaaggtcgttttgtttatttatttatgacatatatagtctattattttgctttctgtccaacaaaatataaatctcgtaa |
218 |
Q |
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| T |
6967 |
ggaccgcaaacttcgagtttaaaggtcgttttgtttatttatttatgacatatatagtctattattttgctttctgtccaacaaaatataaatctcgtta |
7066 |
T |
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| Q |
219 |
ttttctggttcagaatgatgaaaaaggaaccaattgagataaatgaaatactatagactcaataatagnnnnnnnnnnnnnnntgtttatgaatttgata |
318 |
Q |
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| T |
7067 |
t---ctggttcagaatgatgaaaaaggaaccaattgagataaatgaaatactatagactcaataatagaaaaaaaattaaaaatgattatgaatttgata |
7163 |
T |
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| Q |
319 |
gactcaaatataaataaagagcggtgtgttaaggagtatgttggatgtagcatgaaacacttgtgtaataatag-caaagagcaaaatcacatttgacag |
417 |
Q |
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| T |
7164 |
gactcaaatataaataaagagcggtttgttaaggagtatgttggatgtagcatgaaacacttgtgtaataataggcaaagagcaaaatcacatttgacag |
7263 |
T |
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| Q |
418 |
aaaacatgatcgttgtggccggaaatagatggcttctttcatcaacattgttttgtttttgtagaaaaagtttattctttttaaagagcatctccaccaa |
517 |
Q |
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| T |
7264 |
aaaacatgatcgttgtggccggaaatagatggcttctttcatcaacattgttttgtttttgtagaaaaagtttattctttttaaagagcatctccaccaa |
7363 |
T |
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| Q |
518 |
ggattattgagatgaaagttttctaaagcgagttatttagattttgttcat |
568 |
Q |
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| T |
7364 |
ggattattgagatgaaagttttctaaagcgagttatttagattttgttcat |
7414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 10848 - 11094
Alignment:
| Q |
18 |
catgctggagagtttggggataaggctaaacatgcggctcaagaaggtggttcatctcataggaatttaacggctgtgatcaatgatcttaaaatatcga |
117 |
Q |
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| T |
10848 |
catgctcgagagtttggggataaggctaaatgtgcggctcaggaaggtggttcatctcatagaaatttaacagtgttgatcaatgatcttaaaagtttga |
10947 |
T |
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| Q |
118 |
gggaccgcaaacttctagt-ttaaaggtcgttttgtttatttatttatga--catatatagtctat---tattttgctttctgtccaacaaaatataaat |
211 |
Q |
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| T |
10948 |
gggacaataaacttttagtataaaaggcatttttgtttattcacttatgacgcatatatagtctattggtagtttgctttctgtccaaggaaaaataaat |
11047 |
T |
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| Q |
212 |
ctcgtaattttctggtt-cagaatgatgaaaaaggaaccaattgagataa |
260 |
Q |
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| T |
11048 |
ctc---actttctggttccagaatgatgaaaaaggcaccaattgagataa |
11094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 48912700 - 48912848
Alignment:
| Q |
18 |
catgctggagagtttggggataaggctaaacatgcggctcaagaaggtggttcatctcataggaatttaacggctgtgatcaatgatcttaaaatatcga |
117 |
Q |
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|||||| ||||||||||||| || ||||||||||| | |||||||||||||||||||| ||||||||| |||||| | ||| ||||||||| || || |
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| T |
48912700 |
catgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttcatctcattcgaatttaacagctgtggttaattatcttaaaagattga |
48912799 |
T |
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| Q |
118 |
gggaccgcaaacttctagtttaaaggtc-gttttgtttatttatttatg |
165 |
Q |
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| T |
48912800 |
gggacaacaaacctctaatctaaaagtcatttttgtttatttatctatg |
48912848 |
T |
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