View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_low_5 (Length: 439)
Name: NF7447_low_5
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 11487763 - 11487886
Alignment:
| Q |
13 |
gaagcaaataaaattaggcgtcgatgatacagattagaggcaataaaaactgactacattataaattacaagaacttactatttagctttttctgaaggt |
112 |
Q |
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| T |
11487763 |
gaagcaaataaaattaggcgtcgatgatacagattagaggtaa-aaaaactgactacattataaattacaagaacttactatttagctttttctgaaggt |
11487861 |
T |
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| Q |
113 |
gcacaaatagggcacaacatgccaa |
137 |
Q |
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| T |
11487862 |
gcacaaatagggtacaacatgccaa |
11487886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 11487926 - 11488039
Alignment:
| Q |
282 |
taaaacatggcgaaaa-aactaaacaagggaatattagttaatcaaattatgtgtaacttctgaaagttaaaaaccagtatcatcgacaaaggaacaata |
380 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11487926 |
taaaacatggcgaaaaaaactaaacaaggaaatattagttaatcaaattgtgtgtaacttctgaaagttaaaaaccagtatcatcggcaaaggaacaata |
11488025 |
T |
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| Q |
381 |
aaaactcacataaa |
394 |
Q |
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| T |
11488026 |
aaaactcacgtaaa |
11488039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 2922781 - 2922670
Alignment:
| Q |
253 |
attttttgtacaagcatcaca-gtacatattaaaacatggcgaaaaaactaaacaagggaatattagttaatcaaattatgtgtaacttctgaaagttaa |
351 |
Q |
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| T |
2922781 |
attttttgtacatgcataacacgtatatgttaaaacagagtgaaaaaactaaacaatggaatattagttaatcaaattgagtgtaacttttgaaagctaa |
2922682 |
T |
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| Q |
352 |
aaaccagtatca |
363 |
Q |
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| T |
2922681 |
taaccagcatca |
2922670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 18391389 - 18391304
Alignment:
| Q |
310 |
gaatattagttaatcaaattatgtgtaacttctgaaagttaaaaaccagtatcatcgac-aaaggaacaataaaaactcacataaa |
394 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| | | || || |||||||||||||||||||| |
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| T |
18391389 |
gaatattagttaatcaaattgagtgtaacttttaaaagttaataaccaacatcattggcgaagggtacaataaaaactcacataaa |
18391304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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