View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_low_6 (Length: 410)
Name: NF7447_low_6
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 38983937 - 38983545
Alignment:
| Q |
9 |
aaaagaaagttcactatcctcatgtagaatgtcaaatgagttgtgaagacc------------tgaattcgcatcttgcaatgtaatagcaggacctgaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
38983937 |
aaaagaaagttcactatcctcatgtagaatgtcaaatgagttgtgaagagccaaagcaggatctgaattcgcatcttgcaatgtaatagcaggacctgaa |
38983838 |
T |
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| Q |
97 |
ctcatatacttcatgattactgtaacattctcattatctttagctccttcattctctagattcttttgagtagagaaaggccggttttcaagttccatcc |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38983837 |
ctcatatccttcatgattactgtaacattctcattatctttagctccttcattctctagattcttttgagtagagaaaggccggttttcaagttccatcc |
38983738 |
T |
|
| Q |
197 |
gagagttgatggatttactgatattgatagagtcagcaggaacgatctcagactgaggaatctcatgatgaacataatcagtagcaatttcttcaacatt |
296 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38983737 |
gagagtcagtggatttactgatattgatagagtcggcaggaacgatctcagactgaggaatctcatgatgaacataatcagtagcaatttcttcaacatt |
38983638 |
T |
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| Q |
297 |
gagaatcgcacttgcaagatttttcttgctatgcacatcaagtccaccttgtttcttgaaaaatacgattttgaaagcattggatgtgttaga |
389 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38983637 |
gagaatcccacttgcaggatttttcttgctatgcacatcaagtccaccttgtttcttgaaaaatacgattttgaaagcattggatgtgttaga |
38983545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 51524113 - 51524065
Alignment:
| Q |
106 |
ttcatgattactgtaacattctcattatctttagctccttcattctcta |
154 |
Q |
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|||||||||||||| ||| || ||| ||||||||||||||| ||||||| |
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| T |
51524113 |
ttcatgattactgtcacagtcacatcatctttagctccttccttctcta |
51524065 |
T |
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