View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7448_high_2 (Length: 243)

Name: NF7448_high_2
Description: NF7448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7448_high_2
NF7448_high_2
[»] chr4 (2 HSPs)
chr4 (1-232)||(25109603-25109833)
chr4 (112-226)||(3938201-3938315)
[»] chr5 (3 HSPs)
chr5 (112-226)||(39045195-39045309)
chr5 (112-220)||(7280100-7280208)
chr5 (172-223)||(41701214-41701265)
[»] chr1 (2 HSPs)
chr1 (1-106)||(45516594-45516699)
chr1 (1-106)||(44093782-44093887)
[»] chr3 (3 HSPs)
chr3 (6-106)||(49147886-49147986)
chr3 (112-226)||(3423246-3423360)
chr3 (112-226)||(22163917-22164031)
[»] chr8 (3 HSPs)
chr8 (1-104)||(29259107-29259210)
chr8 (1-106)||(13821265-13821370)
chr8 (172-243)||(28574288-28574360)
[»] scaffold0015 (1 HSPs)
scaffold0015 (8-106)||(13900-13998)
[»] chr6 (5 HSPs)
chr6 (1-106)||(16498401-16498506)
chr6 (119-226)||(35164294-35164401)
chr6 (1-51)||(28493627-28493677)
chr6 (1-51)||(29806036-29806086)
chr6 (1-106)||(31932183-31932288)
[»] chr2 (2 HSPs)
chr2 (1-106)||(35296964-35297069)
chr2 (1-106)||(14688491-14688596)
[»] chr7 (2 HSPs)
chr7 (36-106)||(16768109-16768179)
chr7 (112-226)||(33631415-33631529)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25109603 - 25109833
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  25109603 gaaactgatt-aaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagcaatttccacacaattgaagctaatcgccaactttaaacc 25109701  T
Q  101 ttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| |||||||||||||||    
T  25109702 ttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgctgatgctgtgtggacaggttctgcgagatggatgaatatgagcatcaat 25109801  T
Q  201 actagcaactgacagtctattttgcatgatgt 232  Q
    ||||||||||||||||||||||||||| ||||    
T  25109802 actagcaactgacagtctattttgcattatgt 25109833  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 3938315 - 3938201
Alignment:
Q  112 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 211  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3938315 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3938216  T
Q  212 acagtctattttgca 226  Q
     || |||||||||||    
T  3938215 gcattctattttgca 3938201  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 39045309 - 39045195
Alignment:
Q  112 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  39045309 atgaaagtcattctcatttattttttacttgtgaatttgttgatgctgtgtggacaggttctatgagatggatgaatatgagcatcaatactagcagctg 39045210  T
Q  212 acagtctattttgca 226  Q
    | |||||||||||||    
T  39045209 agagtctattttgca 39045195  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 7280100 - 7280208
Alignment:
Q  112 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 211  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| |||||||| || | ||||||||||||||||||||||  ||||||||||||||||    
T  7280100 atgaaactcattctcacctgtttttttcttgtgaatatgctgatgttgtgtggaaaggtgctatgagatggataaatatgagtgtcaatactagcaactg 7280199  T
Q  212 acagtctat 220  Q
     || |||||    
T  7280200 gcaatctat 7280208  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 41701265 - 41701214
Alignment:
Q  172 ctatgagatggataaatatgagcatcaatactagcaactgacagtctatttt 223  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| ||||||||    
T  41701265 ctatgagatggatgaacttgagcatcaatactagcaactgacaatctatttt 41701214  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 45516594 - 45516699
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| |||||||| | |||||| ||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||| |||| ||    
T  45516594 gaaaatgatttaaatcatctttgatgaagttgactgcaagaagggaatctgaatagcacgccaattcctcacaattgaagctgatcgccaaccttaaccc 45516693  T
Q  101 ttgata 106  Q
    ||||||    
T  45516694 ttgata 45516699  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 44093887 - 44093782
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| |||||||| |||||||| |||||||| || ||||  ||||| |||||||||| |||||| ||||| | ||||||| |||| ||    
T  44093887 gaaaatgatttaaatcatctttgatgaggttgactgcaagaagtgagtctgaatagcacgccaattcctaacaatttaagctgaccgccaaccttaaccc 44093788  T
Q  101 ttgata 106  Q
    ||||||    
T  44093787 ttgata 44093782  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 49147886 - 49147986
Alignment:
Q  6 tgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgat 105  Q
    ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| |||||| |||||||||| ||||| ||||||||| |||| |||||||    
T  49147886 tgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaatacctcacaatttaagctgatcgccaaccttaacccttgat 49147985  T
Q  106 a 106  Q
    |    
T  49147986 a 49147986  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 3423360 - 3423246
Alignment:
Q  112 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 211  Q
    |||||| |||||||||  | |||||| ||| ||| | |||||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3423360 atgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3423261  T
Q  212 acagtctattttgca 226  Q
     || |||||||||||    
T  3423260 gcattctattttgca 3423246  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 22163917 - 22164031
Alignment:
Q  112 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 211  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  22163917 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 22164016  T
Q  212 acagtctattttgca 226  Q
     || |||||||||||    
T  22164017 gcattctattttgca 22164031  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29259210 - 29259107
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||    
T  29259210 gaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaaccc 29259111  T
Q  101 ttga 104  Q
    ||||    
T  29259110 ttga 29259107  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 13821370 - 13821265
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| | ||||||||||||||| ||| | ||||||||| |||| |     
T  13821370 gaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgtcaattcctcacaatttaagttgatcgccaaccttaacca 13821271  T
Q  101 ttgata 106  Q
    ||||||    
T  13821270 ttgata 13821265  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 28574360 - 28574288
Alignment:
Q  172 ctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcatgatgtcca-tctcattg 243  Q
    ||||||||||||| ||||||||  ||||||||||||| || || |||||||||||  ||||||| ||||||||    
T  28574360 ctatgagatggatgaatatgagtgtcaatactagcaattggcaatctattttgcaatatgtccagtctcattg 28574288  T

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Target: scaffold0015 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 13998 - 13900
Alignment:
Q  8 atttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 106  Q
    ||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  13998 atttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 13900  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16498401 - 16498506
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| |||||||| ||||| |  ||||||||||| ||||  ||||| ||||||||||||||||| ||| ||| ||||||| |||| ||    
T  16498401 gaaaatgatttaaatcatctttgatgaggttcattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttaaccgccaaccttaaccc 16498500  T
Q  101 ttgata 106  Q
    ||||||    
T  16498501 ttgata 16498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 35164401 - 35164294
Alignment:
Q  119 tcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactgacagtct 218  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||||||||| | |||| |  ||||| ||||| ||| |||||| |||||| || ||||||    
T  35164401 tcattctcatctattttttacttgtgaatatgttgatgttgtgtggacaggtgctataaattggatgaatataagcgtcaatattagcaattggcagtct 35164302  T
Q  219 attttgca 226  Q
    ||| ||||    
T  35164301 attctgca 35164294  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28493677 - 28493627
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 51  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  28493677 gaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 28493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29806086 - 29806036
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 51  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  29806086 gaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 29806036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31932183 - 31932288
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||| ||||| || ||||| || |||||||  ||||||||||| |  |||||| ||||||| ||| ||||||| ||||| |||| ||||| ||     
T  31932183 gaaagtgattcaaatcctccttgatgagtttgacagtgagaagggaatccgaatagcaaaccaattcgtcaaaattgaaactaatagccagctttagact 31932282  T
Q  101 ttgata 106  Q
    ||||||    
T  31932283 ttgata 31932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 35297069 - 35296964
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||    
T  35297069 gaaaatgatttaaatcatcattgatcaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaaccc 35296970  T
Q  101 ttgata 106  Q
    ||||||    
T  35296969 ttgata 35296964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14688596 - 14688491
Alignment:
Q  1 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 100  Q
    |||| ||||||||||| |||||||| |||||||  ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| |     
T  14688596 gaaaatgatttaaatcatctttgatgaggttgattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacct 14688497  T
Q  101 ttgata 106  Q
    ||||||    
T  14688496 ttgata 14688491  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 16768109 - 16768179
Alignment:
Q  36 gcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 106  Q
    ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  16768109 gcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 16768179  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 33631529 - 33631415
Alignment:
Q  112 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 211  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  33631529 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 33631430  T
Q  212 acagtctattttgca 226  Q
     || |||||||||||    
T  33631429 gcattctattttgca 33631415  T

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