View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7448_low_2 (Length: 462)

Name: NF7448_low_2
Description: NF7448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7448_low_2
NF7448_low_2
[»] chr4 (2 HSPs)
chr4 (15-135)||(27316307-27316428)
chr4 (142-182)||(6509856-6509896)
[»] chr3 (4 HSPs)
chr3 (136-218)||(28424311-28424393)
chr3 (413-455)||(28424587-28424629)
chr3 (273-339)||(28424448-28424513)
chr3 (135-182)||(45807043-45807090)
[»] chr8 (3 HSPs)
chr8 (137-218)||(23388234-23388315)
chr8 (273-339)||(23388367-23388433)
chr8 (409-455)||(23388503-23388549)
[»] chr7 (3 HSPs)
chr7 (409-455)||(42840951-42840997)
chr7 (135-214)||(42840750-42840830)
chr7 (142-182)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (143-182)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (135-182)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (136-182)||(17050398-17050444)
chr1 (136-182)||(51606914-51606960)
chr1 (150-182)||(38688643-38688675)
chr1 (150-182)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (133-169)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 27316307 - 27316428
Alignment:
Q  15 ggacatcacgatcacatgttgcaaacaatt-atgcagaggaccatcattcaatccttatctaagaatattagttacttatggtaagtaaatacatcatca 113  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||    
T  27316307 ggacttcacgatcacatgttgcaaacaatttatgcagaggatcatcattcaatcctaatctaagaatattagttacttatagtatgtaaatacatgatca 27316406  T
Q  114 aagataaataggattaaacata 135  Q
    ||||||||||||||||||||||    
T  27316407 aagataaataggattaaacata 27316428  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 6509896 - 6509856
Alignment:
Q  142 gtttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  6509896 gtttagcctgggaaagcaaagttgcttcccagcatgggaaa 6509856  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 28424311 - 28424393
Alignment:
Q  136 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28424311 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctttttacctgcagctggcagtcatgacctg 28424393  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 28424587 - 28424629
Alignment:
Q  413 gctctccttctctgcatctttcttattgttcctcttctctgct 455  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  28424587 gctcttcttctctgcatctttcttattgttcctcttctctgct 28424629  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 28424448 - 28424513
Alignment:
Q  273 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 339  Q
    ||||||||||||||| |||||||||||||| | || ||||| ||||||| ||||||||||| |||||    
T  28424448 gactttgcattctcagagaacaaatgactcatttg-tgtcataatcctactccaattgcacgctgtt 28424513  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 45807090 - 45807043
Alignment:
Q  135 aggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    |||||| ||||||  ||||||||||||||||||||| |||||||||||    
T  45807090 aggtggggtttagaatgggaaagcaaagttgtttcctatgatgggaaa 45807043  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 23388234 - 23388315
Alignment:
Q  137 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  23388234 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaaatttgctttttacctgcagctggcagtcctgacctg 23388315  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 23388367 - 23388433
Alignment:
Q  273 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 339  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23388367 gactttgcattctaagagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 23388433  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 23388503 - 23388549
Alignment:
Q  409 ctcagctctccttctctgcatctttcttattgttcctcttctctgct 455  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  23388503 ctcagctcttcttctctgcatctttcttattgttcctcttccctgct 23388549  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 42840951 - 42840997
Alignment:
Q  409 ctcagctctccttctctgcatctttcttattgttcctcttctctgct 455  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  42840951 ctcagcttttcttctctgcatctttcttattgttcctcttctctgct 42840997  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 42840750 - 42840830
Alignment:
Q  135 aggtggcgtttagcctgggaaagcaaagttgtttcc-catgatgggaaactttgctctttacctgcagctggcagtcatga 214  Q
    |||||||||| || | ||||||| ||||||||||   ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  42840750 aggtggcgttaagtcggggaaagtaaagttgttttttcatgatgggaaactttgctttttacctccagttggcagtcatga 42840830  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 40740666 - 40740706
Alignment:
Q  142 gtttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  40740666 gtttagcatgggaaaggaaaattgtttcccatgatgggaaa 40740706  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 6151 - 6112
Alignment:
Q  143 tttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  6151 tttagcctgggaaaccaaagttgtttcccatgatgggaaa 6112  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 10021004 - 10021051
Alignment:
Q  135 aggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||    
T  10021004 aggtgccgtttagcctgggaaaacaaactagtttcccatgatgggaaa 10021051  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 17050444 - 17050398
Alignment:
Q  136 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    ||||| ||||||| |||||||  ||||||||||||||||||||||||    
T  17050444 ggtggagtttagcttgggaaatgaaagttgtttcccatgatgggaaa 17050398  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 51606914 - 51606960
Alignment:
Q  136 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  51606914 ggtggagtttagcatgggcaaggaaagttgtttcccatgatgggaaa 51606960  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 38688675 - 38688643
Alignment:
Q  150 tgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    |||||||| ||||||||||||||||||||||||    
T  38688675 tgggaaagaaaagttgtttcccatgatgggaaa 38688643  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 49420098 - 49420130
Alignment:
Q  150 tgggaaagcaaagttgtttcccatgatgggaaa 182  Q
    |||||||| ||||||||||||||||||||||||    
T  49420098 tgggaaaggaaagttgtttcccatgatgggaaa 49420130  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 44094086 - 44094122
Alignment:
Q  133 ataggtggcgtttagcctgggaaagcaaagttgtttc 169  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  44094086 ataggtggcatttagcctgggaaatcaaagttgtttc 44094122  T

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