View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7448_low_3 (Length: 367)
Name: NF7448_low_3
Description: NF7448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7448_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 38556566 - 38556230
Alignment:
| Q |
17 |
agcatactcagcttcagagaagattcaaatgctccaaaaattacggtatggtaccactctatatatatcattatcacatggatccattcattcaatcaac |
116 |
Q |
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| T |
38556566 |
agcatactcagcttcagagaagattcaaatgctccaaaaattacagtatggtaccactctatatatatcattatcacatggatccattcatttaatcaac |
38556467 |
T |
|
| Q |
117 |
tagcttttatttatttattagatgaagagatgagtcctatctgggagagatgaggctcaatgtcttcatgatgagtatcagcaagttgtgggcgttgagc |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556466 |
tagcttttatttatt----agatgaagagatgagtcctatctgggagagatgaggctcaatgtcttcatgatgagtatcagcaagttgtgggcgttgagc |
38556371 |
T |
|
| Q |
217 |
cagcacccaacgtccatcttcagtcttcaccatattcctattcaaat-cttgcctccaatttggtggcacagagtgctcatctttcacaaagtcacaagc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556370 |
cagcacccaacgtccatcttcagtcttcaccatattcctattcaaatatttgcctccaatttggtggcacagagtgctcatctttcacaaagtcacaagc |
38556271 |
T |
|
| Q |
316 |
cttattcaccaaagcaatgtccctattagtggttgcttcat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556270 |
cttattcaccaaagcaatgtccctattagtggttgcttcat |
38556230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 38548465 - 38548131
Alignment:
| Q |
17 |
agcatactcagcttcagagaagattcaaatgctccaaaaattacggtatggtaccactctatatatatcattatcacatggatccattcattcaatcaac |
116 |
Q |
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||||||| |||| |||||||||||| | ||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
38548465 |
agcatacacagcgtcagagaagattgacgtgcacc-caaattacaatatgttaccactctatatatatcattatcacatggatccattcaattaatcaac |
38548367 |
T |
|
| Q |
117 |
tagcttttatttatttattagatgaagagatgagtcctatctgggagagatgaggctcaatgtcttcatgatgagtatcagcaagttgtgggcgttgagc |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
38548366 |
tagct----tttatttattagatgaagagatgagtcctatctgggagagatgtggttcaaggtcttcatgatgagtatcaacaacttgtgggcgatgagc |
38548271 |
T |
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| Q |
217 |
cagcacccaacgtccatcttcagtcttcaccatattcctattcaaatcttgcctccaatttggtggcacagagtgctcatctttcacaaagtcacaagcc |
316 |
Q |
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||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |
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| T |
38548270 |
cagcatccaacgtccatcttcagtcttcaccatatttctgttcaaatcttgcctccaatttggtggcacatagtgttcatctttcacaaagtcacaagac |
38548171 |
T |
|
| Q |
317 |
ttattcaccaaagcaatgtccctattagtggttgcttcat |
356 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| |
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| T |
38548170 |
ttattcaccaaagcaatgtccctatcagttgttgcttcat |
38548131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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