View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7449_low_1 (Length: 339)
Name: NF7449_low_1
Description: NF7449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7449_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 34923035 - 34922738
Alignment:
| Q |
18 |
cttccattgttcatacattctcagttggtacattttgaaatagttatcgtagaaaataaagatactcatggtgacattcttggtttgctttctttcgcaa |
117 |
Q |
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| T |
34923035 |
cttccattgttcatacattctcagttggtacattttgaaatagttatcgtagaaaataaagatactcatggtgacattcttggtttgctttctttcgcaa |
34922936 |
T |
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| Q |
118 |
tgtttggttatgggccgatacaaagaggagcttccactagaggattcgtttgttaacacaagttacacaccatctccgcctttacctccacctcaatctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |
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| T |
34922935 |
tgtttggttatgggccgatacaaagaggagcttccactagaggattcgtttgttaacacaagttgcacaccatctccgcatttac------------ctc |
34922848 |
T |
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| Q |
218 |
cagctcagatgtctccatccctgtcatctccacctcagccaactccagccgatccgccggccaagaatgagatccatataaccctcacattcaaaagtgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922847 |
cagctcagatgtctccatccctgtcatctccacctcagccaactccagccgatccgccggccaagaatgagatccatataaccctcacattcaaaagtgt |
34922748 |
T |
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