View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7449_low_3 (Length: 247)
Name: NF7449_low_3
Description: NF7449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7449_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42470737 - 42470968
Alignment:
| Q |
1 |
caaacataatcaatgaggaatgccttttgtaatgtatgttccgataaaactaagaacacactgaacaaaaataatagtctaaattaacaaaaagtatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470737 |
caaacataatcaatgaggaatgccttttgtaatgtatgttccgataaaactaagaacacactgaacaaaaataatagtctaaattaacaaaaagtatgga |
42470836 |
T |
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| Q |
101 |
tgccgttaattccttatgtgctcaatgaaatatgtgatgcacgggttttcctaaatggttgttcaaaaccttgcagttgggtacttatctgtgcaagtac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470837 |
tgccgttaattccttatgtgctcaatgaaatatgtgatgcatgggttttcctaaatggttgttcaaaaccttgcagttgggtacttatctgtgcaagtac |
42470936 |
T |
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| Q |
201 |
atgttggctatgcatgggtacatgccaaatac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42470937 |
atgttggctatgcatgggtacatgccaaatac |
42470968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42478030 - 42478162
Alignment:
| Q |
1 |
caaacataatcaatgaggaatgccttttgtaatgtatgttccgataaaactaagaacacactgaacaaaaataatagtctaaattaacaaaaagtatgga |
100 |
Q |
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|||| |||||| | |||||||| |||||||| ||||||||||||||||||||| || ||| |||||||||| || |||| |||| ||||||||||||||| |
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| T |
42478030 |
caaatataatccacgaggaatgtcttttgtattgtatgttccgataaaactaataaaacattgaacaaaaacaaaagtcgaaatcaacaaaaagtatgga |
42478129 |
T |
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| Q |
101 |
tgccgttaattccttatgtgctcaatgaaatat |
133 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42478130 |
tgccgttaattccttatgtgctcaatgaaatat |
42478162 |
T |
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