View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7449_low_4 (Length: 236)

Name: NF7449_low_4
Description: NF7449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7449_low_4
NF7449_low_4
[»] chr8 (8 HSPs)
chr8 (1-192)||(10187119-10187310)
chr8 (1-192)||(4139049-4139240)
chr8 (1-144)||(918132-918275)
chr8 (1-144)||(28843776-28843919)
chr8 (108-192)||(20172720-20172804)
chr8 (108-192)||(918278-918362)
chr8 (108-184)||(11427456-11427532)
chr8 (108-152)||(28843729-28843773)
[»] chr4 (13 HSPs)
chr4 (1-223)||(21631952-21632174)
chr4 (29-192)||(21803664-21803827)
chr4 (1-192)||(53829687-53829878)
chr4 (1-144)||(2504138-2504281)
chr4 (1-144)||(46093159-46093302)
chr4 (108-192)||(2504284-2504368)
chr4 (45-144)||(2499942-2500041)
chr4 (108-192)||(34737101-34737185)
chr4 (44-144)||(20037104-20037202)
chr4 (1-144)||(34736962-34737098)
chr4 (108-192)||(46093072-46093156)
chr4 (108-176)||(5431496-5431564)
chr4 (12-140)||(43944141-43944279)
[»] chr3 (9 HSPs)
chr3 (1-144)||(35871196-35871339)
chr3 (1-144)||(48267098-48267241)
chr3 (1-144)||(52350587-52350730)
chr3 (108-192)||(35871109-35871193)
chr3 (108-192)||(52350500-52350584)
chr3 (108-192)||(48267011-48267095)
chr3 (114-192)||(26216078-26216156)
chr3 (12-140)||(54945185-54945323)
chr3 (44-140)||(5883867-5883963)
[»] chr7 (6 HSPs)
chr7 (1-144)||(25418713-25418856)
chr7 (1-144)||(47232967-47233109)
chr7 (108-192)||(25418859-25418943)
chr7 (108-192)||(44394431-44394515)
chr7 (108-192)||(47233112-47233196)
chr7 (12-140)||(47932383-47932521)
[»] chr6 (6 HSPs)
chr6 (1-144)||(13432591-13432734)
chr6 (114-192)||(16711410-16711488)
chr6 (108-192)||(13432737-13432821)
chr6 (44-134)||(18883415-18883505)
chr6 (108-192)||(18883318-18883402)
chr6 (39-143)||(26720561-26720663)
[»] chr5 (6 HSPs)
chr5 (1-144)||(37301057-37301200)
chr5 (1-143)||(36991903-36992045)
chr5 (1-143)||(21604272-21604416)
chr5 (108-192)||(21604420-21604504)
chr5 (108-192)||(36991815-36991899)
chr5 (108-192)||(37301203-37301287)
[»] chr2 (11 HSPs)
chr2 (1-144)||(7573229-7573372)
chr2 (1-144)||(16667824-16667967)
chr2 (1-145)||(43564971-43565115)
chr2 (1-145)||(29456180-29456323)
chr2 (1-144)||(41645845-41645988)
chr2 (108-192)||(7573375-7573459)
chr2 (108-192)||(16667970-16668054)
chr2 (108-192)||(41645991-41646075)
chr2 (108-192)||(43564885-43564969)
chr2 (108-186)||(5968165-5968243)
chr2 (108-192)||(29456094-29456178)
[»] chr1 (8 HSPs)
chr1 (1-144)||(13787090-13787233)
chr1 (1-144)||(25806909-25807052)
chr1 (1-144)||(22911793-22911936)
chr1 (108-192)||(13787003-13787087)
chr1 (116-192)||(22911947-22912023)
chr1 (108-192)||(25807055-25807139)
chr1 (44-134)||(39624304-39624394)
chr1 (116-192)||(39624207-39624283)
[»] scaffold1577 (1 HSPs)
scaffold1577 (153-184)||(1556-1587)
[»] scaffold0182 (1 HSPs)
scaffold0182 (12-41)||(8283-8312)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 10187310 - 10187119
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  10187310 tgaaggtcagccaattccatggtcaagggttaaatttccatgtaaatcatcaaaacatgattttgactcttcaatttcacgaagatttagaacattccat 10187211  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10187210 tagaattttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 10187119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 4139240 - 4139049
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||    
T  4139240 tgaaggtcagccaattccatggtcaagggttaaattttcatgtaaatcatcaaaacatgattttgactcttcaatttcacgaagatatagaacattcaat 4139141  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4139140 tagaattttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 4139049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 918132 - 918275
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  918132 tgaaggtcagccaattccatggtcaagggttaaatttccatgtaactgatcaaaacatgattttgactctccaattttacgaagatcaagaacattccat 918231  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  918232 tagaattttgaatagatgtgtgcttctacaattagttacctagg 918275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 28843919 - 28843776
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  28843919 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 28843820  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  28843819 tagaattttgaatagatgtgtgcttctacaattagttacctagg 28843776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 20172804 - 20172720
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20172804 ttgaatagatgtgtacttctacaattagttatctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 20172720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 918278 - 918362
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  918278 ttgaatagatgcgtacttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 918362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 11427456 - 11427532
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataa 184  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11427456 ttgaatagatgtgtacttctacaattagttacctaggatacttgatcttataagaaactattcaattaaaaacataa 11427532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 28843773 - 28843729
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttga 152  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||    
T  28843773 ttgaatagatgtgtgcttctacaattagttacctaggatacttga 28843729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 21631952 - 21632174
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  21631952 tgaaggtcagccaattccatggtcaagggttaaatttccatgtaaatcatcaaaacatgattttgactcttcaatttcacgaagatcaagcacattccat 21632051  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagtannnnnnnn 200  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  21632052 tagaattttgaaaaaaagtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagtatttttttt 21632151  T
Q  201 cgtattacaaagacgcggatact 223  Q
    |||||||||||||| ||||||||    
T  21632152 cgtattacaaagacacggatact 21632174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 21803827 - 21803664
Alignment:
Q  29 gttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttcta 128  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21803827 gttaaatttccatgtaaatcatcaaaacatgattttgactcttcaatttcacgaagatctagaacattccattagaattttgaaaagatgtgtgcttcta 21803728  T
Q  129 caattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21803727 caattatttacgtaggatacttgatcttataagaaattattcaattaaaaatataataagagta 21803664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 53829687 - 53829878
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||| |||||| |||| |||| |||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||| |    
T  53829687 tgaaggtcaaccaatttcatgatcaaaggttaaatttccatgtaaatcatcgaaacatgattttgaatctccaatttcacgaagatcaagaacattcctt 53829786  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53829787 tagaattttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 53829878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 2504138 - 2504281
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  2504138 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 2504237  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  2504238 tagaattttgaatagatgtgtgcttctacaattagttacctagg 2504281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 46093302 - 46093159
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  46093302 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgattttgactctccaatttcatgaagatcaagaacattccat 46093203  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    || ||||||||| ||||| ||||||||||||||| |||||||||    
T  46093202 taaaattttgaatagatgagtgcttctacaattagttacctagg 46093159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 2504284 - 2504368
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2504284 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 2504368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 2499942 - 2500041
Alignment:
Q  45 aatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  2499942 aatcatcaaaacatgattttgtttctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtctgcttctacaattagttacctagg 2500041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 34737101 - 34737185
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34737101 ttgaatagatgtgtgcttctacaattagttatataggatacttgatcttataagaaactattcaattaaaaatataataagagta 34737185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 20037202 - 20037104
Alignment:
Q  44 aaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacctag 143  Q
    |||||||||||||| ||||||| |||  |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  20037202 aaatcatcaaaacatgattttgtctc--caatttcacgaagatcaagaaagttccattagaattttgaatagatgtgtgcttctacaattagttacctag 20037105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34736962 - 34737098
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||   ||| | ||     |||||| ||| |||||||||||||||||| ||||| ||||    
T  34736962 tgaaggtcagccaattccatggtcaaaagttaaatttccatgtac--cattagaa-----ttttgaatctccaatttcacgaagatcaaaaacataccat 34737054  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  34737055 tagaattttgaatagatgtgtgcttctacaattagttacctagg 34737098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 46093156 - 46093072
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  46093156 ttgaatagatgtgtgtttctacaattagttacctaggatacgtgatcttataagaacctattcaattaaaaatataataagagta 46093072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 5431564 - 5431496
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaa 176  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5431564 ttgaatagatgtgtacttctacaattagttacctaggatacttgatcttataagaaactattcaattaa 5431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 43944279 - 43944141
Alignment:
Q  12 caattccatggtcaagggttaaatttcca----------tttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccatt 101  Q
    |||||||||||||||||||||||||||||          || |||||||||||||  || |||| ||||  |||||||  |||||||||| | |||||||    
T  43944279 caattccatggtcaagggttaaatttccatgttgccgcgttcaaatcatcaaaacttgactttgtctctctaatttcagaaagatcaagagcgttccatt 43944180  T
Q  102 agaattttgaaaagatgtgtgcttctacaattatttacc 140  Q
    ||| ||||||  |||| | | |||||||||||| |||||    
T  43944179 agagttttgagtagatatctccttctacaattagttacc 43944141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 35871339 - 35871196
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  35871339 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgattttgactctccaatttcacgaagatcaagaacattccat 35871240  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  35871239 tagaattttgaatagatgtgtgcttctacaattagttacctagg 35871196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 48267241 - 48267098
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  48267241 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgattttgactctccaatttcacgaagatcaagaacattccat 48267142  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  48267141 tagaattttgaatagatgtgtgcttctacaattagttacctagg 48267098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 52350730 - 52350587
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  52350730 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 52350631  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  52350630 tagaattttgaatagatgtgtgcttctacaattagttacctagg 52350587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 35871193 - 35871109
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35871193 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 35871109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 52350584 - 52350500
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52350584 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 52350500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 48267095 - 48267011
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  48267095 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttctaagaacctattcaattaaaaatataataagagta 48267011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 26216156 - 26216078
Alignment:
Q  114 agatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26216156 agatgtgtatttctacaattagttacctaggatacttaatcttataagaaactattcaattaaaaacataataagagta 26216078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 54945185 - 54945323
Alignment:
Q  12 caattccatggtcaagggttaaatttccattt----------aaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccatt 101  Q
    |||||||||||||||||||||||||||||| |          |||||||||||||| || |||| ||||  |||||||  |||||||||| | |||||||    
T  54945185 caattccatggtcaagggttaaatttccatgttgccgcgttcaaatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccatt 54945284  T
Q  102 agaattttgaaaagatgtgtgcttctacaattatttacc 140  Q
    ||| ||||||  |||| ||||||||||| |||| |||||    
T  54945285 agagttttgagtagatatgtgcttctacgattagttacc 54945323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 5883867 - 5883963
Alignment:
Q  44 aaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacc 140  Q
    |||||||||||||| || |||| ||||  |||||||  |||||||||| | || ||||||| ||||||  |||| |||| |||||| |||| |||||    
T  5883867 aaatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgtttcattagagttttgagtagatatgtgattctacgattagttacc 5883963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 25418713 - 25418856
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  25418713 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 25418812  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  25418813 tagaattttgaatagatgtgtgcttctacaattagttacctagg 25418856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 47232967 - 47233109
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||| | ||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||    
T  47232967 tgaaggtcaccaaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgattttgactctccaatt-cacgaaggtcaagaacattccat 47233065  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  47233066 tagaattttgaatagatgtgtgcttctacaattagttacctagg 47233109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 25418859 - 25418943
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25418859 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 25418943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 44394515 - 44394431
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44394515 ttgaatagatgtgtacttctacaattagttatctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 44394431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 47233112 - 47233196
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47233112 ttgaatagatgtgtgcttccacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 47233196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 47932383 - 47932521
Alignment:
Q  12 caattccatggtcaagggttaaatttccattt----------aaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccatt 101  Q
    |||||||||||||||||||||||||||||| |          |||||||||||||| || |||| ||||  |||||||  |||||||||| | |||||||    
T  47932383 caattccatggtcaagggttaaatttccatgttgccgcgttcaaatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccatt 47932482  T
Q  102 agaattttgaaaagatgtgtgcttctacaattatttacc 140  Q
    ||| ||||||  |||| ||||||||||| |||| |||||    
T  47932483 agagttttgagtagatatgtgcttctacgattagttacc 47932521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 13432591 - 13432734
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  13432591 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 13432690  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  13432691 tagaattttgaatagatgtgtgcttctacaattagttacctagg 13432734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 16711410 - 16711488
Alignment:
Q  114 agatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16711410 agatgtgtgcttctacaattagttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 16711488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 13432737 - 13432821
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13432737 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 13432821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 18883505 - 18883415
Alignment:
Q  44 aaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttctacaatta 134  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  18883505 aaatcatcaaaacatgattttgtctctccaatttcacgaagatcaagaacatgccattaaaattttgaatagatgtgtgcttctacaatta 18883415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 18883402 - 18883318
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||    
T  18883402 ttgaatagatgtgtgcttctacaattagttacctaggatacttgttcttataagaaactattctattaaaaacatagtaagagta 18883318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 26720561 - 26720663
Alignment:
Q  39 catttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttctacaattattta 138  Q
    ||||||||||||||||||| || | |  ||||  |||||||  |||||||||| |||||||||||| |||||   ||||||||||||||||||||| |||    
T  26720561 catttaaatcatcaaaacatgaatgtctctct--aatttcagaaagatcaagagcattccattagagttttgtgtagatgtgtgcttctacaattagtta 26720658  T
Q  139 cctag 143  Q
    |||||    
T  26720659 cctag 26720663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 37301057 - 37301200
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    |||||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  37301057 tgaaggtcagccaattccatggtcaaaggttaaatttccatgtacatcatcaaaacatgattttgaatctccaatttcacgaagatcaagaacataccat 37301156  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  37301157 tagaattttgaatagatgtgtgcttctacaattagttacctagg 37301200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 36992045 - 36991903
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  36992045 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgattttgactctccaatttcatgaagatcaagaacattccat 36991946  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctag 143  Q
    || ||||||||| ||||| ||||||||||||||||||||||||    
T  36991945 taaaattttgaatagatgagtgcttctacaattatttacctag 36991903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 21604272 - 21604416
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatc--aagaacattcc 98  Q
    ||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||| ||||||||||||  |||||||||||||||  ||||||||| |    
T  21604272 tgaaggtcagccaattccatgatcaaaggttaaattttcatgtaaatcatcaaaacatgattttgactctctaatttcacgaagatcataagaacatttc 21604371  T
Q  99 attagaattttgaaaagatgtgtgcttctacaattatttacctag 143  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  21604372 attagaattttgaatagatgtgtgcttctacaattagttacctag 21604416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 21604420 - 21604504
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21604420 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 21604504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 36991899 - 36991815
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  36991899 ttgaatagatgtgtgtttctacaattagttacctaggatacgtgatcttataagaacctattcaattaaaattataataagagta 36991815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 37301203 - 37301287
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||  || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37301203 ttgaatagatgtgtgcttctacaattagttatataagatacttgatcttataggaaactattcaattaaaaatataataagagta 37301287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7573229 - 7573372
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  7573229 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 7573328  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  7573329 tagaattttgaatagatgtgtgcttctacaattagttacctagg 7573372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 16667824 - 16667967
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  16667824 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 16667923  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  16667924 tagaattttgaatagatgtgtgcttctacaattagttacctagg 16667967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 43565115 - 43564971
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| | |||||| | |||||| |||||||||||||    
T  43565115 tgaagggcagccaattccatggtcaagggttaaatttccatgtaaatgatcaaaacatgattttgactgtccaattttatgaagatgaagaacattccat 43565016  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagga 145  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||    
T  43565015 tagaattttgaatagatatgtgcttctacaattagttacctagga 43564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 29456323 - 29456180
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| || ||| |||||||| |||||||||||||    
T  29456323 tgaagggcagctaattccatggtcaagggttaaatttccatgtaaatgatcaaaacatgattttgactctccatttt-acgaagatgaagaacattccat 29456225  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagga 145  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||    
T  29456224 tagaattttgaatagatatgtgcttctacaattagttacctagga 29456180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 41645845 - 41645988
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||| ||| |||| |||||||||  ||| ||||||||||||||| |||||||||||| ||||||||  |||||||||||||||||||    
T  41645845 tgaaggtcagccaattctatgatcaaaggttaaattcacatgtaaatcatcaaaacatgattttgactctccaatttcagaaagatcaagaacattccat 41645944  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| |||||  |||||||||||||| |||||||||    
T  41645945 tagaattttgaatagatggatgcttctacaattagttacctagg 41645988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 7573375 - 7573459
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7573375 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 7573459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 16667970 - 16668054
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16667970 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 16668054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 41645991 - 41646075
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||| ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  41645991 ttgaatagatgcgtgcttctacaattagttacctatgatacttgattttataagaacctattcaattaaaaatataataagagta 41646075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 43564969 - 43564885
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  43564969 ttgaatagatgtgtgcttctacaattagttacctatgatacttgatcttataagaacctattcaagtaaaaatatgataagagta 43564885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 5968165 - 5968243
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataata 186  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  5968165 ttgaatagatgtgtgcttctacaattagttatctaggatacttgatcttatacgaaattattcaattaaaaatataata 5968243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 29456178 - 29456094
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| ||||||||| |||||||||    
T  29456178 ttgaatagatgtgtgcttctacaattagttacctaagatacttgatcttataaaaacctattcaagtaaaaatatgataagagta 29456094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 13787233 - 13787090
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  13787233 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 13787134  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  13787133 tagaattttgaatagatgtgtgcttctacaattagttacctagg 13787090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 25806909 - 25807052
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||    
T  25806909 tgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccat 25807008  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  25807009 tagaattttgaatagatgtgtgcttctacaattagttacctagg 25807052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 22911793 - 22911936
Alignment:
Q  1 tgaaggtcagccaattccatggtcaagggttaaatttccatttaaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccat 100  Q
    |||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22911793 tgaaggtcagtcaattccatggtcaagggttaaattttcatgtaaatgatcaaaacatgattttgactctccaatttcacgaagatcaagaacattccat 22911892  T
Q  101 tagaattttgaaaagatgtgtgcttctacaattatttacctagg 144  Q
    |||||||||||| |||||  |||||||||||||  |||||||||    
T  22911893 tagaattttgaatagatgcatgcttctacaatttgttacctagg 22911936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 13787087 - 13787003
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13787087 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 13787003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 22911947 - 22912023
Alignment:
Q  116 atgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22911947 atgtgtgcttctacaattagttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 22912023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 25807055 - 25807139
Alignment:
Q  108 ttgaaaagatgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25807055 ttgaatagatgtgtgcttctacaattagttacctaggatacttgatcttataagaacctattcaattaaaaatataataagagta 25807139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 39624394 - 39624304
Alignment:
Q  44 aaatcatcaaaacaagattttgactcttcaatttcacgaagatcaagaacattccattagaattttgaaaagatgtgtgcttctacaatta 134  Q
    |||||||||||||| ||||||| |||| |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  39624394 aaatcatcaaaacatgattttgtctctccaattttacgaagatcaagaacatgccattaaaattttgaatagatgtgtgcttctacaatta 39624304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 39624283 - 39624207
Alignment:
Q  116 atgtgtgcttctacaattatttacctaggatacttgatcttataagaaactattcaattaaaaatataataagagta 192  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||    
T  39624283 atgtgtgcttctacaattagttacctaggatacttgttcttataagaaactattctattaaaaacatagtaagagta 39624207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1577 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1577
Description:

Target: scaffold1577; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 184
Target Start/End: Complemental strand, 1587 - 1556
Alignment:
Q  153 tcttataagaaactattcaattaaaaatataa 184  Q
    ||||||||||||||||||||||||||||||||    
T  1587 tcttataagaaactattcaattaaaaatataa 1556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 8283 - 8312
Alignment:
Q  12 caattccatggtcaagggttaaatttccat 41  Q
    ||||||||||||||||||||||||||||||    
T  8283 caattccatggtcaagggttaaatttccat 8312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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