View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7449_low_5 (Length: 202)
Name: NF7449_low_5
Description: NF7449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7449_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 43475762 - 43475592
Alignment:
| Q |
18 |
atgagaacaaaggtcatctccattctcagctccactccaatctgccacctgttcgcgctactacttccgacacagttccagatctgtttcttgcaacaga |
117 |
Q |
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| T |
43475762 |
atgagaacaaaggccatctccattctcagctccactcccatctcccacctgttcgcgctactacttccgacacagttccagatctgtttcttgcaacaga |
43475663 |
T |
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| Q |
118 |
aaagtgtcttaggaacgtctcctgcaatatggaacttccagccatctttgagaccaaagcaaggttgtttt |
188 |
Q |
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| T |
43475662 |
aaaatgtcttaggaacgtctcttgcaatatggaacttccagccatctttgagaccaaagcaaggttgtttt |
43475592 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 43564541 - 43564610
Alignment:
| Q |
23 |
aacaaaggtcatctccattctcagctccactccaatctgccacctgttcgcgctactacttccgacacag |
92 |
Q |
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| T |
43564541 |
aacaaaggccatctctagtctcagctccactccaatctgccacctgtgtgcactcctacttcggacacag |
43564610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 16116518 - 16116603
Alignment:
| Q |
35 |
ctccattctcagctccactccaatctgccacctgttcgcgctactacttccgacacagttccagatctgtttcttgcaacagaaaa |
120 |
Q |
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| T |
16116518 |
ctccagtctcagctccactccaatctgccacctgcgtgcactcctacttcagacacagttgcagacctgtttctcgaaacagaaaa |
16116603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 8944190 - 8944080
Alignment:
| Q |
78 |
ctacttccgacacagttccagatctgtttcttgcaacagaaaagtgtcttaggaacgtctcctgcaatatggaacttccag-ccatctttgagaccaaag |
176 |
Q |
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| T |
8944190 |
ctacttccgatacagtttcggacctgtttcttgcaatagaaataagccttgggaacttctcatgcaatattaaacttccagcccatttatgagactaaaa |
8944091 |
T |
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| Q |
177 |
caaggttgttt |
187 |
Q |
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| T |
8944090 |
caaggttgttt |
8944080 |
T |
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