View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7450_high_1 (Length: 728)
Name: NF7450_high_1
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7450_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 719
Target Start/End: Original strand, 31027278 - 31027981
Alignment:
| Q |
18 |
caactgaagttgaaagttaattatatttgtttaccaagtgtatgattttatttacaaatcataataatgtcgctcctatgattactttcacaaaaaatca |
117 |
Q |
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| T |
31027278 |
caactgaagttgaaagttaattatatttgtttaccaagtgtatgattttatttacaaatcataataatgtcgctcctatgattacttttacaaaaaatta |
31027377 |
T |
|
| Q |
118 |
ttaaaggttacgttatcattatttttggaacaattaattgtttgtctctcatctgttgcttagactttcaaacacaaatccatgaaaaggtcacgttcta |
217 |
Q |
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| T |
31027378 |
ttaaatgttacgttaacattatttttggaacaattaattgtttgtctctaatctgttgcttagactttcaaacacaaatccatgaaaaggtcacgttcta |
31027477 |
T |
|
| Q |
218 |
tccaaccttgtcatagattatggcatgaagctaatgatatgagaattatttctacattttccattttaataatttgtattggagtgttgtagatgtttat |
317 |
Q |
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| T |
31027478 |
tccaaccttgtcatagattatggcatgaagctaatgatatgagaattatttctacattttacattttaataatttgtattggagtgttgtagatgtttat |
31027577 |
T |
|
| Q |
318 |
tgttttacaaggacaaacatagtttgaatataagtgaaatgctaaatatagagnnnnnnntttcatacgttcattattctcatgacttgttatctttcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |
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| T |
31027578 |
tgttttacaaggacaaacatagtttgaatataagtgaaatgctaaatatacag-aaaaaatttcatacgttcattattctcatgacttgttatcttgcaa |
31027676 |
T |
|
| Q |
418 |
tactatga---tgttgattttggatatttgttgtctatcatgaaaagttataaaagagattaaaggtaatgaaaagttgataaaatttatttatgttaga |
514 |
Q |
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| T |
31027677 |
tactatgatgttgttgattttggatatttgttgtctatcatgaaaggttataaaagagattaaaggtaatgaaaagttgataaaatatatttatgttaga |
31027776 |
T |
|
| Q |
515 |
ttttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgcatctcgattggctctnnnnnnntccatta |
614 |
Q |
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| T |
31027777 |
ttttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgcatctcgattggctctaaaaaaatccatta |
31027876 |
T |
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| Q |
615 |
taaataaattgatataaacatttatctttttaacatcaaaaggagnnnnnnnnntatgattaagtttctcnnnnnnntttatgctacgatcttcttgatg |
714 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |
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| T |
31027877 |
taaataaattgatataaacatttatctttttaacatcaaaaggagaaaaaaaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatt |
31027976 |
T |
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| Q |
715 |
tccat |
719 |
Q |
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| T |
31027977 |
tccat |
31027981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 585
Target Start/End: Original strand, 31038012 - 31038094
Alignment:
| Q |
503 |
atttatgttagattttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgc |
585 |
Q |
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|||||||||||| | ||||||||| |||| || |||||||||||||| |||||| |||||||||||| |||| |||| |||| |
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| T |
31038012 |
atttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgc |
31038094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 656
Target Start/End: Complemental strand, 31033216 - 31033078
Alignment:
| Q |
518 |
tttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgcatctcgattggctctnnnnnnntccattataa |
617 |
Q |
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||||||||||||| | ||||| ||||||||| ||| ||||| |||||||||||||||||| ||||||||| ||| | ||| ||||||| |
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| T |
31033216 |
tttattgagtgatctaaaggggtaaacatgactcatgtatgtacataaaagacaaaatcattttttgcatctccattagttctgaaaaaaatcattatat |
31033117 |
T |
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| Q |
618 |
ataaattgatataaacatttatctttttaacatcaaaag |
656 |
Q |
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| T |
31033116 |
ataaattaatacacaaatttatcttttttacatcaaaag |
31033078 |
T |
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Back To:
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