View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7450_low_11 (Length: 308)

Name: NF7450_low_11
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7450_low_11
NF7450_low_11
[»] chr8 (1 HSPs)
chr8 (1-295)||(33710762-33711057)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 33711057 - 33710762
Alignment:
Q  1 ggggttggtgaatgttaatgaacagatggcaacaatttcaccttctttggatatgttgtaaatggcatttgtgaggaatatgtatataacgttctacatt 100  Q
    |||||||||||||| ||||||||||||| ||||||| ||  ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33711057 ggggttggtgaatggtaatgaacagatgacaacaatgtcttcttctgtggatatgttgtaaatggcatttgtgaggaatatgtgtataacgttctacatt 33710958  T
Q  101 ttagctattgtttgtagttcacnnnnnnnn-gttaagttgttcggtaactagaatttcattgtcttaaagtgaatcaataacttgtccgttgtatataaa 199  Q
    ||| ||||||||||||||||||         |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  33710957 ttatctattgtttgtagttcactttttttttgttaagttgttcggtaactagaattatattgtcttaaagtgaatcaataacttatccgttgtatataaa 33710858  T
Q  200 atacaatgttcatataaactgacttaagctcacggaacaatttgtgattcatttttattcaagagtttatttatttaagttcttgttgtactcttc 295  Q
    ||| ||||| ||||||||| |||||||  |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33710857 atataatgtccatataaaccgacttaaattcacgggataatttgtggttcatttttattcaagagtttatttatttaagttcttgttgtactcttc 33710762  T

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