View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7450_low_17 (Length: 240)
Name: NF7450_low_17
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7450_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 8045636 - 8045852
Alignment:
| Q |
17 |
aaatattggtagcactaaattaacttttgatttattaatacaccactgttatttattcaaaaacacgtatgataattgatataaagtggacctcgtatta |
116 |
Q |
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| T |
8045636 |
aaatattggtagcactaaattaacttttgatttattaatacaccactattatttattcaaaaacacgtatgataattgatataaagtggacctcgta--- |
8045732 |
T |
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| Q |
117 |
catacaagtggagttgataaaagagtaacgacctcgaaagaaggtatatgcaaccatgcaaacactcaaacgttttataagtcaatctttaattcagaag |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| |
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| T |
8045733 |
-ctacaagtggagttgataaaagagtaacgaccttgaaagaaggtatatgcaatcatgcaaacactcaaacgtt---taagtcaatctttgactcagaag |
8045828 |
T |
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| Q |
217 |
agtaagagactttttgaatagaat |
240 |
Q |
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| T |
8045829 |
agcaagaggcttttcaaatagaat |
8045852 |
T |
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