View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7450_low_2 (Length: 563)
Name: NF7450_low_2
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7450_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 40152733 - 40152202
Alignment:
| Q |
18 |
atgtgtatccaatattaatttgtttatcaacagttgatatttatttgctctactctcaaaagtgagttccgatagttttgtagatcattgattcagtcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152733 |
atgtgtatccaatattaatttgtttatcaacagttgatatttatttgctctactctcaaaagtgagttccgatagttttgtagatcattgattcagtcct |
40152634 |
T |
|
| Q |
118 |
aaatcaaatatatatggcctgcagaggaaaatgtgttgcttttaagaataaagaatcacagtggggaacaagtgtcgaccatagtcttctgcaatctgtg |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152633 |
aaatcagatatatatggcctgcagaggaaaatgtgttgcttttaagaataaagaatcacagtggggaacaagtgtcgaccatagtcttctgcaatctgtg |
40152534 |
T |
|
| Q |
218 |
gggaacaagggtcattggtgaggaagatataaattatagagttttagtttggtcatttatcatactttttggatttggttttgtgataggttgcacgcct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152533 |
gggaacaagggtcattggtgaggaagatataaattatagagttttagtttggtcatttatcatactttttggatttggttttgtgataggttgcacgcct |
40152434 |
T |
|
| Q |
318 |
tcaaccttattatcatcttggactctaacccctcagcctgcaacttcagatattcaatcttaacacctacatccttaacaatcttccttgcatgcttcct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152433 |
tcaaccttattatcatcttggactctaacccctcagcctgcaacttcagatattcaatcttaacacctacatccttaacaatcttccttgcatgcttcct |
40152334 |
T |
|
| Q |
418 |
caannnnnnnnctcatcatccagaagcttctccaggctcctatcattcttgttagtatcagtctcttattttcagaagacatgtcattcatcttctgctc |
517 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152333 |
caattttttttctcatcatccagaagcttctccaggctcctatcattcttgttagtattagtctcttattttcagaagacatgtcattcatcttctgctc |
40152234 |
T |
|
| Q |
518 |
cacgcggccagct--tacaaacgtttttgatg |
547 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
40152233 |
cacgcggccagcttatacaaacgtttttgatg |
40152202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University