View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7450_low_20 (Length: 216)

Name: NF7450_low_20
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7450_low_20
NF7450_low_20
[»] chr7 (14 HSPs)
chr7 (19-192)||(22840293-22840466)
chr7 (19-175)||(22876174-22876330)
chr7 (19-175)||(22809902-22810058)
chr7 (28-175)||(22805567-22805714)
chr7 (19-189)||(22842408-22842578)
chr7 (34-175)||(22894202-22894343)
chr7 (34-175)||(22898521-22898662)
chr7 (19-164)||(22815296-22815441)
chr7 (19-175)||(22889550-22889706)
chr7 (19-180)||(22858672-22858833)
chr7 (39-180)||(22880817-22880958)
chr7 (19-179)||(22831285-22831445)
chr7 (91-192)||(22885833-22885932)
chr7 (28-119)||(22913982-22914073)
[»] chr1 (1 HSPs)
chr1 (19-175)||(21150300-21150456)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 22840466 - 22840293
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  22840466 gatggtaccgctgagttagcctcaactggcttactaagactcaccaatgatacaaaacaagaaaaaggacaagctttctatccaaatcctatagttttca 22840367  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatcttcagatccaact 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22840366 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatcttcatatccaact 22840293  T

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Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 22876330 - 22876174
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| | |||||||||||||||||| |||||||    
T  22876330 gatggtattgctgagttaacctcaaatggcttactaaaactcaccaatgatacagaatatgaaaaaggacatggtttctatccaaatcctatagttttca 22876231  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||| ||||||    
T  22876230 aaaacacttccaatggaagtgtgtcttctttctcaactacttttgtatttgccataa 22876174  T

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Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 22810058 - 22809902
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||    
T  22810058 gatggtattgctgagttaaccccagatggcttactaagactcaccaatgatacagaacatgaaaaaggacatgctttctatccaaatcctgtagttttca 22809959  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    ||||||||  ||| | |||||| ||||||||||||||||||||||||||| ||||||    
T  22809958 aaaacactatcagtgaaagtgtatcttctttctcaactacttttgtatttgccataa 22809902  T

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Target: chr7; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 22805714 - 22805567
Alignment:
Q  28 gctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttcaaaaacactt 127  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||| | || ||| || ||||||||||||||||| || ||||||||||||||||    
T  22805714 gctgagttaacctcagatggcatactaagactcaccaatgatacagaacaagtaataggtcatgctttctatccaaatccaatagttttcaaaaacactt 22805615  T
Q  128 ccagcggaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    |||| | |||||| ||||||||||||||||||||||||||| ||||||    
T  22805614 ccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataa 22805567  T

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Target: chr7; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 22842578 - 22842408
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  |||||||||||||||  |||||||| ||||||||||||||||||||||||  | ||||| || ||||| |||||||| || || |||||||    
T  22842578 gatggtattgctgagttaacctcaggtggcttaccaagactcaccaatgatacaaaacaatacaaaggtcatgctttatatccaaaaccaatagttttca 22842479  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatcttcagatcca 189  Q
    |||||||||| || | |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  22842478 aaaacacttctagtgaaagtgtgtcttctttctcaactacttttttatttgccataaaatctccagatcca 22842408  T

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Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 22894343 - 22894202
Alignment:
Q  34 ttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttcaaaaacacttccagcg 133  Q
    |||||||| |||||||||||||||||||||||||| || ||||| ||||||| ||| |||||||||||||| ||||| ||||| || ||||||||||  |    
T  22894343 ttaacctccaatggcttactaagactcaccaatgacaccaaacaagaaaaagcacatgctttctatccaaaccctatagttttgaagaacacttccaatg 22894244  T
Q  134 gaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  22894243 gaagtgtttcttcattctcaactacttttgtatttgccataa 22894202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 22898662 - 22898521
Alignment:
Q  34 ttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttcaaaaacacttccagcg 133  Q
    |||||||| ||||||||||| ||||||||||||||||| || || ||||||| ||| |||||||||||||||||||| |||||||| |||||||| |  |    
T  22898662 ttaacctccaatggcttacttagactcaccaatgataccaagcaagaaaaagcacatgctttctatccaaatcctatagttttcaagaacacttctaatg 22898563  T
Q  134 gaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  22898562 gaagtgtttcttctttctcaactacttttgtgtttgccataa 22898521  T

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Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 22815441 - 22815296
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||| ||   |  |||||| | |||||||||||||||||||| |||||||    
T  22815441 gatggtattgctgagttaacctcaaatggcttactaaaactcaccaatgatacagaaagagccaaaggatatgctttctatccaaatcctatagttttca 22815342  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgt 164  Q
    ||||||||||||  | |||||| |||||||||||||||||||||||    
T  22815341 aaaacacttccaatgaaagtgtgtcttctttctcaactacttttgt 22815296  T

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Target: chr7; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 22889706 - 22889550
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  |||||||||||  ||||||||||||||| |||||||||||||||| ||   || |||||||| | ||||||||||||||| || |||||||    
T  22889706 gatggtattgctgagttaactacaaatggcttactaaaactcaccaatgatacagaaagagacaaaggacatggtttctatccaaatccaatagttttca 22889607  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    ||||||||||||| | ||| || ||||||||||||||||||||| ||||| ||||||    
T  22889606 aaaacacttccagtgaaagcgtgtcttctttctcaactacttttttatttgccataa 22889550  T

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Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 22858833 - 22858672
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  ||||||||||| |||| ||||||||||||||||||||||||||     || || | || ||| |||||||||||||||||||| |||||||    
T  22858833 gatggtattgctgagttaacttcaactggcttactaagactcaccaatgatatcgggcaagatacagcacatgctttctatccaaatcctatagttttca 22858734  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatct 180  Q
    |||||||||| || | || ||| ||||||||||||||||||||| ||||| |||||||||||    
T  22858733 aaaacacttctagtgaaactgtgtcttctttctcaactacttttttatttgccataaaatct 22858672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 22880958 - 22880817
Alignment:
Q  39 ctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttcaaaaacacttccagcggaagt 138  Q
    |||||||||||||||||||||||||||||| ||| ||   |  |||||| | |||||||||||||||||||| |||||||||||||||||||  | ||||    
T  22880958 ctcaaatggcttactaagactcaccaatgacacagaaagagccaaaggatatgctttctatccaaatcctatagttttcaaaaacacttccaatgaaagt 22880859  T
Q  139 gtttcttctttctcaactacttttgtattttccataaaatct 180  Q
    || | ||||||||||||||||||||||||| |||| ||||||    
T  22880858 gtgtattctttctcaactacttttgtatttgccatcaaatct 22880817  T

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Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 22831445 - 22831285
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  ||||||||||| ||| ||||||||||||||||||||||||||||    |  || | || | | |||||||||||||||| ||| ||||| |    
T  22831445 gatggtattgctgagttaacttcagatggcttactaagactcaccaatgataccgggccagatacagcatatgctttctatccaaatcatatagttttta 22831346  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatc 179  Q
    |||||||||| |  | |||||| || |||||||||||||||||||||||| ||||||||||    
T  22831345 aaaacacttcgaatgcaagtgtgtcatctttctcaactacttttgtatttaccataaaatc 22831285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 22885932 - 22885833
Alignment:
Q  91 gctttctatccaaatcctattgttttcaaaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatcttcagatccaa 190  Q
    |||||||||||||||||||| |||||||||||||||  ||| | |||||| |||||||||||||||| || | ||||| | |||||||||| | ||||||    
T  22885932 gctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactaattctttatttgctataaaatcttaatatccaa 22885835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 22914073 - 22913982
Alignment:
Q  28 gctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttcaa 119  Q
    ||||| |||||||||||||| ||||||||| | ||||||||| ||| |||  |||| || || |||||||||||||| ||||| ||||||||    
T  22914073 gctgaattaacctcaaatggtttactaagattaaccaatgattcaagacaacaaaagggtcatgctttctatccaaaccctatagttttcaa 22913982  T

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Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 21150300 - 21150456
Alignment:
Q  19 gatggtacagctgagttaacctcaaatggcttactaagactcaccaatgatacaaaacatgaaaaaggacaagctttctatccaaatcctattgttttca 118  Q
    |||||||  ||||||||||||||||||||||||||||||||||| | ||||||| | ||||||| ||| || |||||||||||||||||||| ||||||     
T  21150300 gatggtattgctgagttaacctcaaatggcttactaagactcactagtgatacagatcatgaaatagggcatgctttctatccaaatcctatagttttcg 21150399  T
Q  119 aaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataa 175  Q
    ||||||||||| ||| |||||| | |||||| |||||||||||||||||| ||||||    
T  21150400 aaaacacttccggcgaaagtgtgttttctttttcaactacttttgtatttgccataa 21150456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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