View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7450_low_7 (Length: 400)
Name: NF7450_low_7
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7450_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 4359385 - 4359784
Alignment:
| Q |
3 |
tatatatatatgggaaag--gggagaaagaaaaacgtggttttattatttagtgcttgggtgggtgggtttgtgttgccttaagagttaagaggttgtag |
100 |
Q |
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| T |
4359385 |
tatatatatatgggaaagaggggagaaagaaaaacgtggttttattatttagtgcttgggtgggtgggtttgtgttgccttaagagttaagaggttgtag |
4359484 |
T |
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| Q |
101 |
ttgaatctcacgtgagattgtgtagtctaaatgaaaatgtcacgtgactttaaaaaatcatggacgta--------------aaattaggtgcatgtatt |
186 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |
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| T |
4359485 |
ttgaatctcacgtgagattgtgtagtttaaatgaaaatgtcacgtgactataaaaaatcatggacgtattgtaagaaaaaaaaaattaggtgcatgcatt |
4359584 |
T |
|
| Q |
187 |
cctta--aa---tttttcctatggttctaaactaaattactcaattttttgtaactattgaagatgtatttttagttaaaaatcttaggaaaagtcgatn |
281 |
Q |
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|||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359585 |
cctttttaagtgttttttctatggttttaaactaaattactcaattttttgtaactattgaagatgtatttttagttaaaaatcttaggaaaagtcgata |
4359684 |
T |
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| Q |
282 |
nnnnnntgcacctatattttgtacattttataatactccttttttcaaatcgtgtaatgtaataatcaaaataaatatagtttgaaaataattattatga |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359685 |
aaaaaatgcacctatattttgtacattttataatactccttttttcaaatcgtgtaatgtaataatcaaaataaatatagtttgaaaataattattatga |
4359784 |
T |
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