View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7450_low_8 (Length: 385)

Name: NF7450_low_8
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7450_low_8
NF7450_low_8
[»] chr1 (6 HSPs)
chr1 (20-177)||(14999088-14999243)
chr1 (60-209)||(43013352-43013501)
chr1 (60-209)||(50151921-50152070)
chr1 (99-188)||(26724180-26724269)
chr1 (99-188)||(26732297-26732386)
chr1 (88-209)||(38864261-38864380)
[»] chr2 (4 HSPs)
chr2 (122-209)||(6999659-6999746)
chr2 (99-188)||(42482038-42482127)
chr2 (80-203)||(14360890-14361013)
chr2 (20-92)||(11762686-11762756)
[»] chr5 (4 HSPs)
chr5 (99-209)||(14135593-14135703)
chr5 (99-209)||(27513406-27513516)
chr5 (88-209)||(1462804-1462924)
chr5 (157-209)||(38694213-38694265)
[»] chr7 (3 HSPs)
chr7 (99-209)||(19124512-19124623)
chr7 (109-188)||(27922479-27922558)
chr7 (99-209)||(42062895-42063004)
[»] chr3 (2 HSPs)
chr3 (60-112)||(34021255-34021307)
chr3 (126-203)||(7945051-7945128)
[»] chr8 (3 HSPs)
chr8 (88-203)||(42146844-42146958)
chr8 (99-209)||(31664089-31664198)
chr8 (99-209)||(35177139-35177249)
[»] chr6 (1 HSPs)
chr6 (122-209)||(18059220-18059307)
[»] scaffold0060 (1 HSPs)
scaffold0060 (94-209)||(61320-61435)
[»] chr4 (1 HSPs)
chr4 (126-209)||(33747414-33747496)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 14999088 - 14999243
Alignment:
Q  20 tcaaacactttgaaagaggaaggaactaaagtctaaaaatgaaagcttgcaatgatagacagatgaagttgatagattttatttggtgcagatgaactat 119  Q
    ||||||| |||||||||| | |||||||||||||||||  ||| |||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||    
T  14999088 tcaaacaatttgaaagagaatggaactaaagtctaaaagagaatgcttgcaacgataaacagatgaagttgatatattttatttggtgcagatggactat 14999187  T
Q  120 ggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttgga 177  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  14999188 ggtaagaattggtagctgatttaatctaatggtta--aaaaaagtggtccatcttgga 14999243  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 43013352 - 43013501
Alignment:
Q  60 gaaagcttgcaatgatagacagatgaagttgatagattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaa 159  Q
    ||||||||||||||||||| ||||||||||||| | || |||||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||    
T  43013352 gaaagcttgcaatgatagagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattggtagctgatttaatctaatggttgaaaaa 43013451  T
Q  160 aaagtggtccatcttggatcaaaacttcaaagatccaagctaaacggcac 209  Q
    ||| |||||||||||| | |||| || ||||| ||||||||||| |||||    
T  43013452 aaattggtccatcttgaaccaaatctgcaaaggtccaagctaaatggcac 43013501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 50151921 - 50152070
Alignment:
Q  60 gaaagcttgcaatgatagacagatgaagttgatagattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaa 159  Q
    ||||||||||||||||||| | ||||||||||| | || |||||| || ||||| |||||| ||||||||||||||||||||||| |||||||| | |||    
T  50151921 gaaagcttgcaatgatagagatatgaagttgatgggttgtatttgatgtagatggactatgataagaattggtagctgatttaatttaatggttgaaaaa 50152020  T
Q  160 aaagtggtccatcttggatcaaaacttcaaagatccaagctaaacggcac 209  Q
    ||| ||||||||||| || |||| || ||||||||||||||||| |||||    
T  50152021 aaattggtccatcttagaccaaatctgcaaagatccaagctaaatggcac 50152070  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 26724180 - 26724269
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttca 188  Q
    |||||||||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||    
T  26724180 tatttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggtccatcttagaccaaaacttca 26724269  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 26732297 - 26732386
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttca 188  Q
    |||||||||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||    
T  26732297 tatttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggtccatcttagaccaaaacttca 26732386  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 38864261 - 38864380
Alignment:
Q  88 ttgatagattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttc 187  Q
    ||||| |||| |||||||||  |||| || ||| ||||||||| | | ||||| ||||||| ||||||  ||||| ||||||||||| || |||||||||    
T  38864261 ttgatggattgtatttggtgtggatggaccatgataagaattgattgttgattcaatctaaaggttaa--aaaaattggtccatcttagaccaaaacttc 38864358  T
Q  188 aaagatccaagctaaacggcac 209  Q
    |  | |||||| |||| |||||    
T  38864359 atgggtccaagttaaatggcac 38864380  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 6999746 - 6999659
Alignment:
Q  122 taagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaagctaaacggcac 209  Q
    ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || |||||||||| || ||||||||||| |||||    
T  6999746 taagaattggttgttgattcaatctaaaggttaaaaaaaaaatggtccatcttagaccaaaacttcataggtccaagctaaatggcac 6999659  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 42482038 - 42482127
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttca 188  Q
    |||||||||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||    
T  42482038 tatttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggtccatcttagaccaaaacttca 42482127  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 14360890 - 14361013
Alignment:
Q  80 agatgaagttgatagattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatc 179  Q
    |||| |||||||||| || ||| |||||  |||  || ||| ||||||||| ||| ||||||||||||| |||  | |||||| ||||||||||| || |    
T  14360890 agataaagttgataggttatatatggtgtggatagaccatgataagaattgctagatgatttaatctaaaggtggaaaaaaaattggtccatcttagacc 14360989  T
Q  180 aaaacttcaaagatccaagctaaa 203  Q
    |||||| ||| | || ||||||||    
T  14360990 aaaactacaagggtcaaagctaaa 14361013  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 11762686 - 11762756
Alignment:
Q  20 tcaaacactttgaaagaggaaggaactaaagtctaaaaatgaaagcttgcaatgatagacagatgaagttgat 92  Q
    |||||||||||||||||| || ||||| |||||| |||  ||||||||||||| | ||  |||||||||||||    
T  11762686 tcaaacactttgaaagagaaatgaactcaagtctgaaacagaaagcttgcaataaaag--agatgaagttgat 11762756  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 14135703 - 14135593
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaag 198  Q
    |||||||||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||  | ||||||    
T  14135703 tatttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggtccatcttagaccaaaacttcatgggtccaag 14135604  T
Q  199 ctaaacggcac 209  Q
    ||||| |||||    
T  14135603 ctaaatggcac 14135593  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 27513516 - 27513406
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaag 198  Q
    |||||||||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| | |||| ||||||||||| ||  |||||||||  | ||||||    
T  27513516 tatttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaataaaattggtccatcttagacaaaaacttcatgggtccaag 27513417  T
Q  199 ctaaacggcac 209  Q
    ||||| |||||    
T  27513416 ctaaatggcac 27513406  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 1462924 - 1462804
Alignment:
Q  88 ttgatagattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttc 187  Q
    ||||| |||| |||||| ||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| || || ||||| ||| ||||||||    
T  1462924 ttgatggattgtatttgatgtggatggaccatgataagaattggttgttgattcaatctaaaggttaa-aaaaaattgatctatcttagattaaaacttc 1462826  T
Q  188 aaagatccaagctaaacggcac 209  Q
    |  | ||||||||||| |||||    
T  1462825 atgggtccaagctaaatggcac 1462804  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 38694265 - 38694213
Alignment:
Q  157 aaaaaagtggtccatcttggatcaaaacttcaaagatccaagctaaacggcac 209  Q
    |||||| |||||||||||  | |||||||||| |||||||||||||| |||||    
T  38694265 aaaaaattggtccatcttaaaccaaaacttcatagatccaagctaaatggcac 38694213  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 19124512 - 19124623
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggta-gctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaa 197  Q
    |||||||||  ||||||| ||| |||||||||||  | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||  | |||||    
T  19124512 tatttggtgtggatgaaccatgataagaattggtttgttgattcaatctaaaggttaaaaaaaaattggtccatcttagaccaaaacttcatgggtccaa 19124611  T
Q  198 gctaaacggcac 209  Q
    |||||| |||||    
T  19124612 gctaaatggcac 19124623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 27922558 - 27922479
Alignment:
Q  109 agatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttca 188  Q
    ||||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||    
T  27922558 agatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggtccatcttagaccaaaacttca 27922479  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 42062895 - 42063004
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaag 198  Q
    |||||||||  ||||||| ||| ||||||||||| | ||||| ||| ||| |||||| |||||| |||| ||| || || ||||| ||||  ||||||||    
T  42062895 tatttggtgtggatgaaccatgataagaattggttgttgattcaatttaaaggttaa-aaaaaattggttcattttagaccaaaatttcattgatccaag 42062993  T
Q  199 ctaaacggcac 209  Q
    ||||| |||||    
T  42062994 ctaaatggcac 42063004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 34021255 - 34021307
Alignment:
Q  60 gaaagcttgcaatgatagacagatgaagttgatagattttatttggtgcagat 112  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  34021255 gaaagcttgcaatgatagagagatgaagttgatggattgtatttgatgcagat 34021307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 7945051 - 7945128
Alignment:
Q  126 aattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaagctaaa 203  Q
    ||||||||| ||||| ||||||| |||||| |||||| |||||||||||    ||||| ||||  |||||||||||||    
T  7945051 aattggtagttgattcaatctaaaggttaaaaaaaaattggtccatcttaacccaaaatttcattgatccaagctaaa 7945128  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 42146844 - 42146958
Alignment:
Q  88 ttgatagattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttc 187  Q
    ||||| |||| |||||| ||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || |||||||||    
T  42146844 ttgatggattgtatttgatgtggatggaccatgataagaattggttgttgattcaatctaaaggttaa-aaaaaattggtccatcttagaccaaaacttc 42146942  T
Q  188 aaagatccaagctaaa 203  Q
       |||||||||||||    
T  42146943 ttggatccaagctaaa 42146958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 31664198 - 31664089
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaag 198  Q
    |||||||||  |||| || ||| ||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||  | | ||||    
T  31664198 tatttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaa-aaaaaattggtccatcttagaccaaaacttcatgggttcaag 31664100  T
Q  199 ctaaacggcac 209  Q
    ||||| |||||    
T  31664099 ctaaatggcac 31664089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 35177139 - 35177249
Alignment:
Q  99 tatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaag 198  Q
    |||||||||  ||||||| ||| |||||||| || | ||||| ||||||| |||||| |||||| |||||||||||  | ||||||||||  | || |||    
T  35177139 tatttggtgtggatgaaccatgataagaattagttgttgattcaatctaaaggttaaaaaaaaattggtccatcttaaaccaaaacttcatgggtctaag 35177238  T
Q  199 ctaaacggcac 209  Q
    ||||| |||||    
T  35177239 ctaaatggcac 35177249  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 18059220 - 18059307
Alignment:
Q  122 taagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaagctaaacggcac 209  Q
    ||||||||||| | ||||| ||||||| |||||| |||||| || |||||||| || ||||||||||  | ||||||||||| |||||    
T  18059220 taagaattggttgttgattcaatctaaaggttaaaaaaaaattgatccatcttagaccaaaacttcatgggtccaagctaaatggcac 18059307  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 61320 - 61435
Alignment:
Q  94 gattttatttggtgcagatgaactatggtaagaattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagat 193  Q
    |||| |||||||||  |||| || ||| |||||||||||   ||||| ||||||| |||||| |||||| || |||||||| || ||||| ||||  | |    
T  61320 gattgtatttggtgtggatggaccatgataagaattggttattgattcaatctaaaggttaaaaaaaaattgatccatcttagaccaaaatttcatgggt 61419  T
Q  194 ccaagctaaacggcac 209  Q
    |||||||||| |||||    
T  61420 ccaagctaaatggcac 61435  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 33747496 - 33747414
Alignment:
Q  126 aattggtagctgatttaatctaatggttaagaaaaaagtggtccatcttggatcaaaacttcaaagatccaagctaaacggcac 209  Q
    ||||||| | ||||| ||||||| |||||| |||||| ||||||||||| || ||||||||||  | ||||||||||| |||||    
T  33747496 aattggttgttgattcaatctaaaggttaa-aaaaaattggtccatcttagaccaaaacttcatgggtccaagctaaatggcac 33747414  T

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