View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7450_low_9 (Length: 348)
Name: NF7450_low_9
Description: NF7450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7450_low_9 |
 | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0171 (1 HSPs) |
| | |
|
| [»] scaffold0220 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 76 - 336
Target Start/End: Original strand, 27451195 - 27451455
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||| |
|
|
| T |
27451195 |
cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc |
27451294 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27451295 |
aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtcttcgctcaattaccct |
27451394 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27451395 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgt |
27451455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 76 - 327
Target Start/End: Original strand, 23907324 - 23907575
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
23907324 |
cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc |
23907423 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
23907424 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
23907523 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg |
327 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23907524 |
ttcccataactttatggtatgactcattagcttaattcccctataattcgcg |
23907575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 48623549 - 48623804
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| || | |||||||||| ||||||||| |
|
|
| T |
48623549 |
cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc |
48623648 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
48623649 |
gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccct |
48623748 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48623749 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
48623804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 76 - 330
Target Start/End: Original strand, 1778038 - 1778293
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt |
174 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| ||| |
|
|
| T |
1778038 |
cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt |
1778137 |
T |
|
| Q |
175 |
cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc |
274 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||||| ||||| |||||| |||| |||||| ||||||||||||| || || |||| |
|
|
| T |
1778138 |
cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccc |
1778237 |
T |
|
| Q |
275 |
tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa |
330 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1778238 |
tttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa |
1778293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 76 - 301
Target Start/End: Complemental strand, 435492 - 435267
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||| | |||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
435492 |
cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc |
435393 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||| |||| ||| || ||||||||||||| || || ||||| |
|
|
| T |
435392 |
gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtcttctttcgatcaccct |
435293 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactca |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
435292 |
ttcccataacttcatggtatgactca |
435267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 76 - 290
Target Start/End: Complemental strand, 53703870 - 53703655
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt |
174 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| |||||||| |
|
|
| T |
53703870 |
cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt |
53703771 |
T |
|
| Q |
175 |
cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc |
274 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| ||||||| ||| | ||||||| |||| |||||| ||||||||||||| || || |||| |
|
|
| T |
53703770 |
cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtcttctttcgatcaccc |
53703671 |
T |
|
| Q |
275 |
tttcccataacttcat |
290 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53703670 |
tttcccataacttcat |
53703655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 328
Target Start/End: Complemental strand, 39707725 - 39707472
Alignment:
| Q |
75 |
tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt |
174 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| || | ||||||||| |||| ||| |
|
|
| T |
39707725 |
tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt |
39707626 |
T |
|
| Q |
175 |
cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc- |
273 |
Q |
| |
|
||||||||||| || ||| | ||||| | || ||||||||||||| |||| ||||| ||| || | | ||||||||||||||| ||||| ||| |
|
|
| T |
39707625 |
cgaagtaagtaaatcgctttcgtagtcaatct-ccaggcataaaacaaaattggttattcgtaaatcgactttcttttcttagtcttcgttcaatcacct |
39707527 |
T |
|
| Q |
274 |
ctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgc |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
39707526 |
ttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc |
39707472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 27446759 - 27446818
Alignment:
| Q |
16 |
catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27446759 |
catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt |
27446818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 16001137 - 16001225
Alignment:
| Q |
249 |
ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcatt-agcttaattcccctataattcgcgcaatgatgt |
336 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| | ||||||| |||||||||| |||||| |||| |
|
|
| T |
16001137 |
ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgt |
16001225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 56224835 - 56224776
Alignment:
| Q |
264 |
ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt |
323 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
56224835 |
ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatt |
56224776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
| Q |
81 |
aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt |
146 |
Q |
| |
|
||||||| |||| ||||||| ||| ||||| |||||| | |||||||||| |||||||||||||| |
|
|
| T |
2296429 |
aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt |
2296364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 79 - 329
Target Start/End: Original strand, 45368651 - 45368901
Alignment:
| Q |
79 |
aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| | |||||||||| || |||| |||||||| || |||||||||||| |||||||||||| |
|
|
| T |
45368651 |
aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa |
45368750 |
T |
|
| Q |
179 |
gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc |
278 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
45368751 |
gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtcttcgttcaattaccctttc |
45368850 |
T |
|
| Q |
279 |
ccataacttcatggtatgactcattagcttaattcccctataattcgcgca |
329 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45368851 |
ccataatttcatggtatgactcattagcttaattcccctataattcgcgca |
45368901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 76 - 323
Target Start/End: Original strand, 452638 - 452885
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
452638 |
cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc |
452737 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
452738 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
452837 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataatt |
323 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
452838 |
ttctcgtaacttcatggtatgactcattagcttaattcccctataatt |
452885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 24584628 - 24584886
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||| | |||||| || || |||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
24584628 |
cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc |
24584727 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctc---aattac |
272 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| |||| |||||| |||||||||||| | || ||| || |
|
|
| T |
24584728 |
gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtctttgttcaataatcac |
24584827 |
T |
|
| Q |
273 |
cctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24584828 |
cctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaat |
24584886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 83 - 331
Target Start/End: Complemental strand, 8180046 - 8179798
Alignment:
| Q |
83 |
tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa |
182 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| |||||| |
|
|
| T |
8180046 |
tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa |
8179947 |
T |
|
| Q |
183 |
gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccat |
282 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| || || |||||||||||| |
|
|
| T |
8179946 |
gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccat |
8179847 |
T |
|
| Q |
283 |
aacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8179846 |
aacttcatggtatgacttattagcttaattcccctataattcgcgcaat |
8179798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 331
Target Start/End: Complemental strand, 37281316 - 37281111
Alignment:
| Q |
126 |
aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat |
225 |
Q |
| |
|
|||||||||||| |||||||||| | || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| |||||||||||| |
|
|
| T |
37281316 |
aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat |
37281217 |
T |
|
| Q |
226 |
aagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg |
325 |
Q |
| |
|
|||||| |||| | ||| | ||| ||||||||||| ||||| || ||| |||||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
37281216 |
tggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcg |
37281117 |
T |
|
| Q |
326 |
cgcaat |
331 |
Q |
| |
|
|||||| |
|
|
| T |
37281116 |
cgcaat |
37281111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 13148482 - 13148336
Alignment:
| Q |
175 |
cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc |
274 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || |||||||||| ||||| |||||| |||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
13148482 |
cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc |
13148384 |
T |
|
| Q |
275 |
tttcccataacttcatggtatgactcattagcttaattcccctataat |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
13148383 |
tttcccataacttcatggtaagactcattagtttaattcccctataat |
13148336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg |
161 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
2609788 |
cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg |
2609703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc |
149 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || ||||||||||||||||| |
|
|
| T |
14769560 |
cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc |
14769487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 33251497 - 33251337
Alignment:
| Q |
154 |
cgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttc |
253 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||| | |||||||||| ||||| | |||||||||||| || ||||| |||| || || |||| |
|
|
| T |
33251497 |
cgatatcgctccatcacacgtcgaagtaattagataacttccatagaagacctttcgggcataaaaccagattggttataagtaactcgaatcacttttt |
33251398 |
T |
|
| Q |
254 |
ttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcc |
314 |
Q |
| |
|
|||||||||| ||||| ||| ||| ||||| |||||||| ||||||||| || |||||||| |
|
|
| T |
33251397 |
ttagtcttcgttcaatcaccattttccatagcttcatgggatgactcataagtttaattcc |
33251337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
| Q |
75 |
tcacaaaatctctctaggtactctatcatacgccttccccaaat |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
13148583 |
tcacaaaatctctctaggcactctatcacacaccttccccaaat |
13148540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 76 - 332
Target Start/End: Complemental strand, 32629868 - 32629616
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| ||||||||| |
|
|
| T |
32629868 |
cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc |
32629769 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
|||||| | || |||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
32629768 |
gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtcttcgttcaattaccct |
32629673 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32629672 |
ttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatg |
32629616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 80 - 331
Target Start/End: Complemental strand, 36651250 - 36650999
Alignment:
| Q |
80 |
aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag |
179 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
36651250 |
aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag |
36651151 |
T |
|
| Q |
180 |
taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc |
279 |
Q |
| |
|
||||||| | |||||||| |||||||||||| ||||||||||||| |||||| |||| |||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
36651150 |
taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttcc |
36651051 |
T |
|
| Q |
280 |
cataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
36651050 |
cataacttcatggtatgactcattagcttaattctcctataattcacgcaat |
36650999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 76 - 321
Target Start/End: Original strand, 39907401 - 39907646
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
39907401 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc |
39907500 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||||||| |||||| |||| | |||| ||||||||||||| || || ||||| |
|
|
| T |
39907501 |
gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtcttctttcgatcaccct |
39907600 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39907601 |
ttcccataacttcatggtatgactcattagcttaattccccaataa |
39907646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 33350828 - 33351083
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
33350828 |
cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt |
33350927 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||||||||| |||||| |||| |||||| ||||||||||||| | || ||||| |
|
|
| T |
33350928 |
gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttgatcaccct |
33351027 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33351028 |
ttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
33351083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 38896877 - 38896622
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| | ||||| |
|
|
| T |
38896877 |
cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc |
38896778 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||| ||| |||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
38896777 |
gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
38896678 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38896677 |
tttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat |
38896622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 24178217 - 24178472
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| || ||||| |||| || || ||||||||| |||||| || |
|
|
| T |
24178217 |
cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc |
24178316 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
| || |||||| || |||||||||||||||||| ||| ||||||||||| |||||| |||| ||||||| ||||||||||||||| | ||| ||||| |
|
|
| T |
24178317 |
gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtcttcgttgaatcaccct |
24178416 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
24178417 |
ttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaat |
24178472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 135 - 331
Target Start/End: Complemental strand, 11592890 - 11592694
Alignment:
| Q |
135 |
caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct |
234 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||||||||||||||||| || | |||||||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
11592890 |
caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc |
11592791 |
T |
|
| Q |
235 |
ttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||| |||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592790 |
gtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
11592694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 22346772 - 22346586
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
22346772 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc |
22346673 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttc |
262 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||||||||| |
|
|
| T |
22346672 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtcttc |
22346586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
38606298 |
cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc |
38606200 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaa |
219 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||| ||||||| |
|
|
| T |
38606199 |
gaagtaagtagatcgctttcatagtcgacctcccagacataaaa |
38606156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| |||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
46356873 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc |
46356972 |
T |
|
| Q |
176 |
gaagtaagtag |
186 |
Q |
| |
|
||||||||||| |
|
|
| T |
46356973 |
gaagtaagtag |
46356983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc |
149 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| ||||||||| |
|
|
| T |
36870346 |
cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc |
36870419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
| Q |
72 |
ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa |
131 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
11593217 |
ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa |
11593158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 76 - 332
Target Start/End: Original strand, 20428659 - 20428915
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | ||||||||| || |||||||||||||| || |||||||||||| |||| |||| |
|
|
| T |
20428659 |
cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc |
20428758 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| ||||||||||| || ||||| | |||| ||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
20428759 |
aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtcttcgttcaattaccct |
20428858 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20428859 |
ttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatg |
20428915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 80 - 329
Target Start/End: Original strand, 5260274 - 5260523
Alignment:
| Q |
80 |
aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||| || |||||||||||| ||| |||||||| |
|
|
| T |
5260274 |
aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa |
5260373 |
T |
|
| Q |
180 |
taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc |
279 |
Q |
| |
|
||| || || |||||||| ||||||||||| ||||||||||||| |||||| |||| ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
5260374 |
taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcc |
5260473 |
T |
|
| Q |
280 |
cataacttcatggtatgactcattagcttaattcccctataattcgcgca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5260474 |
cataacttcatggtatgactcattagcttaattcccctataattcgcgca |
5260523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 329
Target Start/End: Complemental strand, 30670132 - 30669902
Alignment:
| Q |
98 |
tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat |
197 |
Q |
| |
|
||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| | ||||||| |
|
|
| T |
30670132 |
tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat |
30670033 |
T |
|
| Q |
198 |
agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatga |
297 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| |||| ||||||| |||||||||||||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
30670032 |
agtcgacctcct-ggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatga |
30669934 |
T |
|
| Q |
298 |
ctcattagcttaattcccctataattcgcgca |
329 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
30669933 |
ctcattagcttaattcccctataatttgcgca |
30669902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 6082660 - 6082394
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||| | |||||||||| |||||||| |||||||| || |||||||||| | |||| ||| |
|
|
| T |
6082660 |
cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc |
6082561 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gttatctttaacatgagtctattttcttagtcttcgc |
264 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| ||| || |||||| |||| |||||| ||||||||||||| |
|
|
| T |
6082560 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggttatccgtaactcgagtctcctttcttagtcttctt |
6082461 |
T |
|
| Q |
265 |
tcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6082460 |
tcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
6082394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 261
Target Start/End: Complemental strand, 9706035 - 9705850
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || |||||| |
|
|
| T |
9706035 |
cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc |
9705936 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt |
261 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||| ||| | |||||| |||| ||||||| ||||||||||||| |
|
|
| T |
9705935 |
gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagtctt |
9705850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| ||| || | |
|
|
| T |
3629526 |
cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc |
3629427 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat |
225 |
Q |
| |
|
||||||||||| ||| |||||| |||||||||| | |||||||| ||||| |
|
|
| T |
3629426 |
gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat |
3629377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 331
Target Start/End: Complemental strand, 26290995 - 26290789
Alignment:
| Q |
124 |
aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa |
223 |
Q |
| |
|
|||||||| |||||||| ||||| | ||| ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| ||| |||||||| || |
|
|
| T |
26290995 |
aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa |
26290897 |
T |
|
| Q |
224 |
ataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt |
323 |
Q |
| |
|
|| || || |||| |||| || |||| |||||||||| ||||| || |||| |||||| |||||||||||||| || ||||||||||||| ||| |
|
|
| T |
26290896 |
attgattgtcaataacttgagactctttttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcatt |
26290797 |
T |
|
| Q |
324 |
cgcgcaat |
331 |
Q |
| |
|
||| |||| |
|
|
| T |
26290796 |
cgcacaat |
26290789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 287
Target Start/End: Original strand, 2681479 - 2681669
Alignment:
| Q |
97 |
ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca |
196 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||| ||||||| ||||||| | || ||||||| | || ||||||| |||||| || |||||| |
|
|
| T |
2681479 |
ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatcgttgtaccatacgtcgaactaagtaagtcgcttcca |
2681578 |
T |
|
| Q |
197 |
tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataactt |
287 |
Q |
| |
|
||||| || | ||| ||||||||||||| |||||| | | |||||| |||||||| ||||| ||||| |||||||||| |||||| |
|
|
| T |
2681579 |
tagtcaactttacagacataaaaccaaattggttatccattcctcgagtctcttttcttaatcttccttcaatcaccctttcccgtaactt |
2681669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 43241403 - 43241658
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
43241403 |
cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc |
43241502 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||| || || ||||| |
|
|
| T |
43241503 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct |
43241602 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
43241603 |
ttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaat |
43241658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 76 - 329
Target Start/End: Complemental strand, 8671178 - 8670925
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
8671178 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc |
8671079 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||| ||| || ||||||||| ||| || || ||||| |
|
|
| T |
8671078 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaactcgaggctcctttcttagttttctttccatcaccct |
8670979 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8670978 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca |
8670925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 76 - 327
Target Start/End: Original strand, 51441786 - 51442037
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||||| | ||||||||||||||| || |||||| | |||||||||| ||||||||||||||||| || |||||| |||| ||||||||| |
|
|
| T |
51441786 |
cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc |
51441885 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
51441886 |
gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
51441985 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51441986 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg |
51442037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 97 - 331
Target Start/End: Original strand, 49348445 - 49348679
Alignment:
| Q |
97 |
ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca |
196 |
Q |
| |
|
|||||| ||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| | |||||| |
|
|
| T |
49348445 |
ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca |
49348544 |
T |
|
| Q |
197 |
tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| || || |||||||||||| ||||||||||||| |
|
|
| T |
49348545 |
tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatg |
49348644 |
T |
|
| Q |
297 |
actcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49348645 |
actcattagcttaattctcctataattcgcgcaat |
49348679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 76 - 320
Target Start/End: Original strand, 29173551 - 29173795
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| || ||||||||||| |||| |||| |
|
|
| T |
29173551 |
cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc |
29173650 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |||||||||||||||| ||||||| |||| |||||| |||||||||| |||| ||||| | ||| |
|
|
| T |
29173651 |
gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagttttcgttcaatcatcct |
29173750 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctata |
320 |
Q |
| |
|
||| |||||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
29173751 |
ttcgcataacttgattgtacgactcattagtttaattcccctata |
29173795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 323
Target Start/End: Original strand, 32405486 - 32405729
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || || |||| | |||||||||| |||| ||||||||||| || |||||| ||| |||| ||| |
|
|
| T |
32405486 |
cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc |
32405582 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | |||||||||||||||| | ||||||||| |||||| |||| |||| || ||| |||||||||||| |||||||| ||| | |
|
|
| T |
32405583 |
gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcacctt |
32405681 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataatt |
323 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
32405682 |
ttcccataacttcatggtatgactcataaggttaatttccctataatt |
32405729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 305
Target Start/End: Complemental strand, 45833820 - 45833593
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||||||| ||||| | ||||||||| | ||| |||||||||| ||| | ||||| |||| |||| |||| |
|
|
| T |
45833820 |
cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc |
45833721 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||| |||||| || || || ||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||| | | | |
|
|
| T |
45833720 |
gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc--aaacttgagtctatttctttagtcttcgctcaatcatcat |
45833623 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattag |
305 |
Q |
| |
|
||| ||||||||||||| ||||||| |||| |
|
|
| T |
45833622 |
ttctcataacttcatggcatgactcgttag |
45833593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
| Q |
243 |
agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc |
324 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11681914 |
agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc |
11681833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 301
Target Start/End: Original strand, 35829434 - 35829638
Alignment:
| Q |
97 |
ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca |
196 |
Q |
| |
|
|||| ||| |||||| |||||| | |||||||||| || | |||||||||| ||| | |||| | ||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
35829434 |
ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca |
35829533 |
T |
|
| Q |
197 |
tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg |
296 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||| |||| |||| | |||||||| ||| || ||||| || ||||||||||||||| ||||||| |
|
|
| T |
35829534 |
tagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatcactctttcccataacttcttggtatg |
35829633 |
T |
|
| Q |
297 |
actca |
301 |
Q |
| |
|
||||| |
|
|
| T |
35829634 |
actca |
35829638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 290
Target Start/End: Original strand, 34828107 - 34828321
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||| ||| ||| |||||||| | ||| ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| || |||| |
|
|
| T |
34828107 |
cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc |
34828206 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
|||||| |||| || |||| ||| |||||||||| ||||||| ||||| ||| |||| ||||| ||| ||| |||||| |||||| | ||| |
|
|
| T |
34828207 |
gaagtaggtagatcgcttctataatcgacctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcct |
34828306 |
T |
|
| Q |
276 |
ttcccataacttcat |
290 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34828307 |
ttcccataacttcat |
34828321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 76 - 332
Target Start/End: Original strand, 15216293 - 15216547
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| | |||||||||| || |||||||||||||| ||||||||||| | ||| ||||| |
|
|
| T |
15216293 |
cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc |
15216390 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15216391 |
gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccct |
15216490 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg |
332 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15216491 |
ttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatg |
15216547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 36544411 - 36544157
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| || |||||||||| ||||||||| |
|
|
| T |
36544411 |
cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc |
36544313 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||| || || ||||| |
|
|
| T |
36544312 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct |
36544213 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36544212 |
ttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaat |
36544157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 76 - 310
Target Start/End: Original strand, 42855035 - 42855271
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg |
173 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || ||||||||||| ||| || | |||||||||| ||||||| |
|
|
| T |
42855035 |
cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg |
42855134 |
T |
|
| Q |
174 |
tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc |
273 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||||| | |
|
|
| T |
42855135 |
tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtcttcgctcaattttc |
42855234 |
T |
|
| Q |
274 |
ctttcccataacttcatggtatgactcattagcttaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855235 |
ctttcccataacttcatggtatgactcattagcttaa |
42855271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
36566263 |
cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc |
36566362 |
T |
|
| Q |
176 |
ga |
177 |
Q |
| |
|
|| |
|
|
| T |
36566363 |
ga |
36566364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
| Q |
113 |
ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa |
182 |
Q |
| |
|
|||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
6184883 |
ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa |
6184814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 13588800 - 13588720
Alignment:
| Q |
243 |
agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt |
323 |
Q |
| |
|
||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
13588800 |
agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatt |
13588720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 30579245 - 30579305
Alignment:
| Q |
77 |
acaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaa |
137 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||| |||||| | | |||||||| ||||| |
|
|
| T |
30579245 |
acaaaatctctctaggcactctatgattcgccttctccaaatgaattaaaactaagtgcaa |
30579305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 2076496 - 2076751
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || |||||| |
|
|
| T |
2076496 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc |
2076595 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
2076596 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
2076695 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2076696 |
ttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaat |
2076751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 20318251 - 20317996
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| | |||||||||| |||||||||| |||||| || |||||||||||| ||||||||| |
|
|
| T |
20318251 |
cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc |
20318152 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
20318151 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccct |
20318052 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20318051 |
ttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaat |
20317996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 24177784 - 24177529
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| ||||| |
|
|
| T |
24177784 |
cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc |
24177685 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||| |||||||||| |||||||||||||||||| |||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
24177684 |
gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
24177585 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24177584 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaat |
24177529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 331
Target Start/End: Original strand, 1288596 - 1288805
Alignment:
| Q |
122 |
tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc |
221 |
Q |
| |
|
|||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| | |||||| | |||||||||||| ||||||||| |
|
|
| T |
1288596 |
tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc |
1288695 |
T |
|
| Q |
222 |
aaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa |
321 |
Q |
| |
|
|||| |||||| |||| |||||| ||||||||||||| || || ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1288696 |
aaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataa |
1288795 |
T |
|
| Q |
322 |
ttcgcgcaat |
331 |
Q |
| |
|
||||| |||| |
|
|
| T |
1288796 |
ttcgcacaat |
1288805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 325
Target Start/End: Complemental strand, 27215 - 26970
Alignment:
| Q |
79 |
aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa |
178 |
Q |
| |
|
||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| ||| |
|
|
| T |
27215 |
aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa |
27116 |
T |
|
| Q |
179 |
gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc |
278 |
Q |
| |
|
|||||||| || ||||||||||||| || || ||||||||||||| |||||| |||| ||||| |||||||| | |||| ||||| |||| | |
|
|
| T |
27115 |
gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaaatggttatcagtaactcaagtcttttttcttaattttcgttcaatcacccgctt |
27017 |
T |
|
| Q |
279 |
ccataacttcatggtatgactcattagcttaattcccctataattcg |
325 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27016 |
ccatgacttcatggtatgactcattaatttaattcccctataattcg |
26970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
| Q |
251 |
ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa |
321 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22832091 |
ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa |
22832161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 315
Target Start/End: Complemental strand, 37123831 - 37123591
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||| |||||| | |||||||||| |||| ||||||||||| |||| ||||||| ||||| ||| |
|
|
| T |
37123831 |
cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt |
37123733 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac--c |
273 |
Q |
| |
|
| ||||||||| ||||||| || |||||| || || |||||||||||| | ||| | |||| ||||||| |||||||||||||| ||||| || |
|
|
| T |
37123732 |
gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaatttgattaacaataacttgagtctcttttcttagtcttcattcaatcacttt |
37123633 |
T |
|
| Q |
274 |
ctttcccataacttcatggtatgactcattagcttaattccc |
315 |
Q |
| |
|
||| ||||||||||||||||||| |||| || |||| |||| |
|
|
| T |
37123632 |
tttttccataacttcatggtatgaatcataagtttaactccc |
37123591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
| Q |
250 |
tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt |
323 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || |||||| ||||||||| |
|
|
| T |
25937183 |
tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt |
25937109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 314
Target Start/End: Original strand, 756080 - 756214
Alignment:
| Q |
180 |
taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc |
279 |
Q |
| |
|
||||||| || ||||||| || ||||| ||||||||||| |||| ||||| ||| | ||||||| ||||||| |||| |||||||| || |||||| |
|
|
| T |
756080 |
taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc |
756179 |
T |
|
| Q |
280 |
cataacttcatggtatgactcattagcttaattcc |
314 |
Q |
| |
|
|||||||| ||||| ||||| | || |||||||| |
|
|
| T |
756180 |
cataacttgttggtacgactcttaagtttaattcc |
756214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 51448731 - 51448986
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
51448731 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc |
51448830 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||| ||| | |||||||||||||||||||||| |||||||||||| |||||| |||| |||||| ||||||||||||| || || ||||| |
|
|
| T |
51448831 |
gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct |
51448930 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51448931 |
ttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaat |
51448986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 52138088 - 52137833
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
52138088 |
cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc |
52137989 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||| |||| |||||||||||||||||||||||||| |||||| |||| || ||| ||||| ||||||| || || ||||| |
|
|
| T |
52137988 |
gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaactcgaatctcctttctgagtcttctttcgatcaccct |
52137889 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52137888 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaat |
52137833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 94 - 331
Target Start/End: Complemental strand, 38849344 - 38849107
Alignment:
| Q |
94 |
actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt |
193 |
Q |
| |
|
|||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| |||||||||| | ||| |
|
|
| T |
38849344 |
actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt |
38849245 |
T |
|
| Q |
194 |
ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggt |
293 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| |||| |||||| ||||||||| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
38849244 |
ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggt |
38849145 |
T |
|
| Q |
294 |
atgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
38849144 |
atgactcattagtttaattcccttataattcgcgcaat |
38849107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 324
Target Start/End: Complemental strand, 3369016 - 3368775
Alignment:
| Q |
81 |
aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag |
179 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||| | ||||||||| |||||||||||||| ||| || ||||| ||||| ||| ||||||||| |
|
|
| T |
3369016 |
aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag |
3368920 |
T |
|
| Q |
180 |
taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc |
279 |
Q |
| |
|
|| |||| | |||| ||||||||| ||| || ||| | ||| |||| | |||| |||| |||||| ||||||||||||||| ||||| || ||||| |
|
|
| T |
3368919 |
taggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaactcgagtctcttttcttagtcttcgttcaatcacattttcc |
3368820 |
T |
|
| Q |
280 |
cataacttcatggtatgactcattagcttaattcccctataattc |
324 |
Q |
| |
|
|||||||||||||||||| | || || ||||||| ||||||||| |
|
|
| T |
3368819 |
cataacttcatggtatgaattataagtttaattcttctataattc |
3368775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 331
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
| Q |
159 |
tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt |
258 |
Q |
| |
|
||||||| |||| ||| |||||||||| |||| ||||| |||||||| || ||||||||||||| |||||| |||| || |||| |||||||| | |
|
|
| T |
27916753 |
tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt |
27916656 |
T |
|
| Q |
259 |
cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat |
331 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||| | ||| ||||||||||||| |||||| |
|
|
| T |
27916655 |
cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat |
27916583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
| Q |
79 |
aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt |
146 |
Q |
| |
|
||||| |||||||| | ||||||||||| ||| |||||| | |||||||||| |||||||||||||| |
|
|
| T |
48221038 |
aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt |
48220971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc |
149 |
Q |
| |
|
|||||||| |||| ||| ||||| |||| |||||| |||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
50630343 |
cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc |
50630414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 76 - 327
Target Start/End: Original strand, 13280 - 13531
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| || |||||||||| |||||||| |
|
|
| T |
13280 |
cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc |
13379 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||||||||||||| |||||| |||| |||||| | |||||||||||| ||||| ||| | |
|
|
| T |
13380 |
gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccat |
13479 |
T |
|
| Q |
276 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13480 |
ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg |
13531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 76 - 284
Target Start/End: Complemental strand, 30728 - 30520
Alignment:
| Q |
76 |
cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| | | |||||||||| ||||||||||||||||| || ||||||||| | |||||||| |
|
|
| T |
30728 |
cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt |
30629 |
T |
|
| Q |
176 |
gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct |
275 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| ||||| ||||| |
|
|
| T |
30628 |
gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccct |
30529 |
T |
|
| Q |
276 |
ttcccataa |
284 |
Q |
| |
|
||||||||| |
|
|
| T |
30528 |
ttcccataa |
30520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 90130 - 90297
Alignment:
| Q |
94 |
actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt |
193 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| ||||| ||| |||||| ||||||| |||||| |
|
|
| T |
90130 |
actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt |
90229 |
T |
|
| Q |
194 |
ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt |
261 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| |||||| |||| |||||| ||||||||||||| |
|
|
| T |
90230 |
ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt |
90297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
| Q |
98 |
tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat |
197 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||| | | ||||||||| || |||||||||| |||| ||| ||||||| | || |||| || |
|
|
| T |
5685 |
tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat |
5586 |
T |
|
| Q |
198 |
agtcgacctcccaggcat |
215 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
5585 |
attcgacctcccatgcat |
5568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 25277 - 25340
Alignment:
| Q |
122 |
tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta |
185 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| ||| ||| |||||||||||||| |
|
|
| T |
25277 |
tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta |
25340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 14931 - 15001
Alignment:
| Q |
199 |
gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat |
269 |
Q |
| |
|
|||||||||| || ||||||||||||| | |||| ||| |||||||| |||| |||||||||||||||| |
|
|
| T |
14931 |
gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat |
15001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University