View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7451_high_4 (Length: 249)
Name: NF7451_high_4
Description: NF7451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7451_high_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 23482365 - 23482244
Alignment:
| Q |
128 |
tgaggaaaaataaagagttttgtaacaaccaaaagttgatagcaaaaatgcactgtcttaagttcagaccatgcacttttcaacttacagaccattaaaa |
227 |
Q |
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| T |
23482365 |
tgaggaaaaataaagagttttgtaacaaccaaaagttgacagcaaaatcgcacggtcttaagttcagaccgtgcacttttcaacttccagaccattaaaa |
23482266 |
T |
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| Q |
228 |
cgcatgacctccttcagtaagc |
249 |
Q |
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| T |
23482265 |
cgcatgacctccttcagtaagc |
23482244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 23483135 - 23483024
Alignment:
| Q |
19 |
gagttatatgattaccaacctcggttttgtagttgtgattatatgaaaagactgagtttataagtttaatggtttattggttttaaatttagatataata |
118 |
Q |
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| T |
23483135 |
gagttatatgattaccaacctcgttttt-tagttgtgattatatgaaaagaccgagtttataagtttaatggtttattggttttaaatttagatataata |
23483037 |
T |
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| Q |
119 |
aaagcgttgtgag |
131 |
Q |
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| T |
23483036 |
aaagcgttgtgag |
23483024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 35407118 - 35407022
Alignment:
| Q |
22 |
ttatatgattaccaacctcggttttgtagttgtgattatatgaaaagactgagtttataagtttaatggtttattggttttaaatttagatataataaa |
120 |
Q |
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| T |
35407118 |
ttatatgattaccaatcttgttttt--agttgtgattagctgaaaagatcaagtttataagttcaatggtttgttggttttaaattcagatattataaa |
35407022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 17734534 - 17734630
Alignment:
| Q |
16 |
atagagttatatgattaccaacctcggttttgtagttgtgattatatgaaaagactgagtttataagtttaatggtttattggttttaaatttagatat |
114 |
Q |
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| T |
17734534 |
atagagttatttgattaccaatcatgttttt--agttgtgattatctgaaaagatcaagtttataagtttaatgggttcttggttttaattttagatat |
17734630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 21276722 - 21276641
Alignment:
| Q |
130 |
aggaaaaataaagagttttgtaacaaccaaaagttgatagcaaaaatgcactgtcttaagttcagaccatgcacttttcaactt |
213 |
Q |
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| T |
21276722 |
aggaaaaccaaagagttttgtaacagc-aaaagttgacaggaaaaatgcacggtct-aggctcagaccgtgcacttttcaactt |
21276641 |
T |
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