View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7451_low_2 (Length: 604)
Name: NF7451_low_2
Description: NF7451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7451_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 597
Target Start/End: Complemental strand, 31601410 - 31600829
Alignment:
| Q |
19 |
acagtattaggcttcagttctgcctgcatgttgagaaacagatgccttactggcttacttatccattgcacttcatatgtctccatgccattagaggagt |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31601410 |
acagtatcaggcttcagttctgcctgcatgttgagaaacagatgccttactggcttacttatccattgcacttcatatgtctccatgccattagaggagt |
31601311 |
T |
|
| Q |
119 |
cataattctccgccttttcccttgcagtatcaaccacatacttggaattgttaaagatgtttctacaacatttgtagcaacaacaacaagcctctttccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31601310 |
cataattctccgccttttcccttgcagtatcaaccacatacttggaattgttaaagatgtttctacaacatttgtagcaacaacaacaagcctctttccc |
31601211 |
T |
|
| Q |
219 |
tccttaactccttcaaatagacgaagttgagctgcagcaggcagcacggcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactttctc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31601210 |
tccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactttctc |
31601111 |
T |
|
| Q |
319 |
tagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagcttgccc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31601110 |
tagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagcttgccc |
31601011 |
T |
|
| Q |
419 |
agacaatttttcaaaagcatccttcaaagaaacaagacttccttcctttcccaatgcatccaaaatatcactcttgttctcagaatcctcgcgatcatca |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31601010 |
agacaatttttcaaaagcatccttcaaagaaacaatacttccttcctttcccaatgcatccaaaatatcactcttgttctcagaatcctcgtgatcatca |
31600911 |
T |
|
| Q |
519 |
tcatcattgaattccagttcaccctttgcgtagcttcctatgcaagcctt---ctaccttttgttcagtgacagaataatat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
31600910 |
tcatcattgaattccagttcaccctttgcgtagcttcctatgcaagccttctactaccttttgttcagtgacagaaaaatat |
31600829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 72 - 486
Target Start/End: Complemental strand, 49776966 - 49776563
Alignment:
| Q |
72 |
cttacttatccattgcacttcatatgtctccatgccattagaggagtcataattctccgccttttcccttgcagtatcaaccacatactt-------gga |
164 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
49776966 |
cttacttatccatttcacttcatatgtctccatgccattagaggaatcataattcttcaccttttcccttccagtatcaaccacatacttaatccctgga |
49776867 |
T |
|
| Q |
165 |
attgttaaagatgtttctacaacatttgtagcaacaacaacaagcctctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagca |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| || | ||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
49776866 |
attgttaaagatgtttctgcaacatttgtagcaacaacaacaagtctttctccctccttgactccatcaaatacacgaagttgagctgcagcaggcagca |
49776767 |
T |
|
| Q |
265 |
cggcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttc |
364 |
Q |
| |
|
|| ||||| |||||| ||||||||||||||||| | | ||| ||||||||||||| ||||| |||| ||||||||||| |||||||| ||||| |
|
|
| T |
49776766 |
tagcataaaggggtagaacaaagagtgcacctggagaggaatcatgattttctctagctattttctccctgccaacttttgattggtctaaactgtcttc |
49776667 |
T |
|
| Q |
365 |
tgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagcttgcccagacaatttttcaaaagcatccttcaaagaaacaagacttccttcc |
464 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||||||||||| |||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
49776666 |
tgtattca------------------catttgaggaacttaatgttgcttgcccagacaagttttcaaaagcagccttcaatgaagcaagacttccttca |
49776585 |
T |
|
| Q |
465 |
tttcccaatgcatccaaaatat |
486 |
Q |
| |
|
||||| ||| |||||| ||||| |
|
|
| T |
49776584 |
tttcctaatacatccacaatat |
49776563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 72 - 486
Target Start/End: Original strand, 7992321 - 7992724
Alignment:
| Q |
72 |
cttacttatccattgcacttcatatgtctccatgccattagaggagtcataattctccgccttttcccttgcagtatcaaccacatactt-------gga |
164 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
7992321 |
cttacttatccatttcacctcatatgtctccatgccattagaggaatcataattcttcaccttttcccttccagtatcaaccacatacttaatccctgga |
7992420 |
T |
|
| Q |
165 |
attgttaaagatgtttctacaacatttgtagcaacaacaacaagcctctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagca |
264 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| || |||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
7992421 |
attgttaaagatgtttctgcaacatttgtagcaacaacaactagtctctctccctccttgactccatcaaatacacgaagttgagctgcagcaggcagca |
7992520 |
T |
|
| Q |
265 |
cggcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttc |
364 |
Q |
| |
|
|| ||||| |||||| ||||||||||||||||| | | |||| ||||||||||||| ||||| |||| |||||| |||| ||||||||| ||||| |
|
|
| T |
7992521 |
tagcataaagtggtagaacaaagagtgcacctggagaggaatcgtgattttctctagctattttctccctgccaactttcgattggtctaaaccatcttc |
7992620 |
T |
|
| Q |
365 |
tgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagcttgcccagacaatttttcaaaagcatccttcaaagaaacaagacttccttcc |
464 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||||||||||| ||||| |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
7992621 |
tgtattca------------------catttgaggaacttaatgttgcttgcccagacaagttttcgaaagcagccttcaatgaagcaagacttccttca |
7992702 |
T |
|
| Q |
465 |
tttcccaatgcatccaaaatat |
486 |
Q |
| |
|
||||| || |||||| ||||| |
|
|
| T |
7992703 |
tttcctaagacatccacaatat |
7992724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University