View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7451_low_4 (Length: 366)

Name: NF7451_low_4
Description: NF7451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7451_low_4
NF7451_low_4
[»] chr3 (2 HSPs)
chr3 (24-325)||(3810169-3810451)
chr3 (200-287)||(1329564-1329651)
[»] chr7 (2 HSPs)
chr7 (181-269)||(45489216-45489304)
chr7 (200-287)||(42539903-42539990)
[»] chr6 (1 HSPs)
chr6 (181-257)||(8187133-8187209)
[»] chr5 (1 HSPs)
chr5 (211-275)||(40286926-40286990)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 3810169 - 3810451
Alignment:
Q  24 acctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810169 acctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaag 3810268  T
Q  124 acaattttcattcaacaagacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattga 223  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  3810269 acaattttcattcaacaagagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg------------ 3810356  T
Q  224 tttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattga 323  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3810357 -------acctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattga 3810449  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
Q  200 aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca 287  Q
    |||||||||| ||||||||| |||| ||||||||||| ||||| || ||  | |||||||| ||| | ||||| |||| |||||||||    
T  1329564 aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca 1329651  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
Q  181 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg 269  Q
    |||||| |||||||   ||||| ||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| |||||    
T  45489216 ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg 45489304  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
Q  200 aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca 287  Q
    |||||||||| ||||||||| |||| ||||||||||| ||||| || ||  | |||||||| ||| | ||||| |||| |||||||||    
T  42539990 aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca 42539903  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
Q  181 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt 257  Q
    |||||| |||||||   ||||| ||||||||||||||||||||| ||| |||  || ||||| ||||||||||||||    
T  8187133 ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt 8187209  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
Q  211 gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt 275  Q
    |||||||| |||| || ||||||||| ||||| ||||||||||| || ||||| || ||||||||    
T  40286990 gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt 40286926  T

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