View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7451_low_5 (Length: 288)
Name: NF7451_low_5
Description: NF7451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7451_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 40409673 - 40409414
Alignment:
| Q |
12 |
taagaaaccccgtaatcagctccacattgtactcttgtgagatatgatcctcgtgcctcatcatcttccctatgatgggg-ggtgtagaagacatgtcac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40409673 |
taagaaaccccgtaatcagctccacattgtactcttgtgagatatgatcctcgtgcctcatcatcttccctatgatggggaggtgtagaagacatgtcac |
40409574 |
T |
|
| Q |
111 |
atcatcaagtgtgatgatcatctccataacatgctgatgtaagttactggtctcctcgtgctacctctctgaaaatgcagtaatcatcgcattactaacg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40409573 |
atcatcaagtgtgatgatcatctccataacatgctgatgtaagttactcgtctcctcgtgctacctctctgaaaatgcagtaataatcgcattactaacg |
40409474 |
T |
|
| Q |
211 |
gtagaaaacccattattaagtagtgggaaaaaatcggatccataaattggagtcctgaac |
270 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40409473 |
gcagaaaacccattattaagtagtgggaaaaaatcggatccataaattggagtcctgaac |
40409414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 31117875 - 31117942
Alignment:
| Q |
100 |
agacatgtcacatcatcaagtgtgatgatcatctccataacatgctgatgtaagttactggtctcctc |
167 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||| ||||| | |||| ||||| ||||||||||| |
|
|
| T |
31117875 |
agacatgtcatatcatctagtgtgatggtcatctccctaacaggtagatgaaagttgctggtctcctc |
31117942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University