View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7451_low_7 (Length: 250)

Name: NF7451_low_7
Description: NF7451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7451_low_7
NF7451_low_7
[»] chr2 (5 HSPs)
chr2 (52-154)||(42574653-42574755)
chr2 (59-151)||(20703260-20703352)
chr2 (59-154)||(42575530-42575625)
chr2 (13-50)||(42574786-42574823)
chr2 (13-47)||(42575455-42575489)
[»] chr8 (1 HSPs)
chr8 (13-154)||(10035733-10035877)
[»] chr6 (4 HSPs)
chr6 (52-154)||(14955452-14955554)
chr6 (77-154)||(14951402-14951479)
chr6 (13-47)||(14956085-14956119)
chr6 (77-154)||(14956178-14956256)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 42574755 - 42574653
Alignment:
Q  52 caaattatttttatggtaaatatcatagtcagatttgtagataaatccaaattgacaacagttactttttcaagtattactggatttatgctaatgtaat 151  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  42574755 caaattgtttttatggtaaatatcatagtcagatttgtagataaatccagattgacagtagttactttttcaagtattactggatttatgctaatgtaat 42574656  T
Q  152 agt 154  Q
    |||    
T  42574655 agt 42574653  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 20703260 - 20703352
Alignment:
Q  59 tttttatggtaaatatcatagtcagatttgtagataaatccaaattgacaacagttactttttcaagtattactggatttatgctaatgtaat 151  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||||||  |||||||||    
T  20703260 ttttgatggtaaatatcatagtcagatttgtagacaaatccagattgacaatagttactttttgaagtaatactggatttatattaatgtaat 20703352  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 42575530 - 42575625
Alignment:
Q  59 tttttatggtaaatatcatagtcagatttgtagataaatccaaattgacaacagttactttttcaagtattactggatttatgctaatgtaatagt 154  Q
    |||| |||||||| ||||| ||||  |||||||| ||||||||| ||| |  ||||||||||||||||| ||||||||||||| ||||||||||||    
T  42575530 ttttgatggtaaaaatcatggtcatgtttgtagacaaatccaaaatgatagtagttactttttcaagtaatactggatttatgttaatgtaatagt 42575625  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 42574823 - 42574786
Alignment:
Q  13 attctcaaaaatgcaatcacaaacaactcaatggatgt 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42574823 attctcaaaaatgcaatcacaaacaactcaatggatgt 42574786  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 42575455 - 42575489
Alignment:
Q  13 attctcaaaaatgcaatcacaaacaactcaatgga 47  Q
    ||||| |||||||||||||||||||||||||||||    
T  42575455 attctgaaaaatgcaatcacaaacaactcaatgga 42575489  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 10035877 - 10035733
Alignment:
Q  13 attctcaaaaatgcaatcacaaacaactcaatggatgtgc---aaattatttttatggtaaatatcatagtcagatttgtagataaatccaaattgacaa 109  Q
    ||||| |||||||||||| |||||||||||||| | ||     ||| | |||| |||||||| || ||||||||||||||||| ||||||| |||||||     
T  10035877 attctgaaaaatgcaatcgcaaacaactcaatgaaagtctttgaaactgttttgatggtaaagataatagtcagatttgtagacaaatccagattgacag 10035778  T
Q  110 cagttactttttcaagtattactggatttatgctaatgtaatagt 154  Q
     ||||||||||||||||| ||||||| ||||||||||||||||||    
T  10035777 tagttactttttcaagtaatactggacttatgctaatgtaatagt 10035733  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 14955554 - 14955452
Alignment:
Q  52 caaattatttttatggtaaatatcatagtcagatttgtagataaatccaaattgacaacagttactttttcaagtattactggatttatgctaatgtaat 151  Q
    |||||| |||| |||||||| | ||||||  ||||||| || |||||||||||||||| ||| ||||||||||||| || | |||| |||||||||||||    
T  14955554 caaattgttttgatggtaaagaccatagtgggatttgttgacaaatccaaattgacaatagtaactttttcaagtaataatcgattcatgctaatgtaat 14955455  T
Q  152 agt 154  Q
    |||    
T  14955454 agt 14955452  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 14951402 - 14951479
Alignment:
Q  77 tagtcagatttgtagataaatccaaattgacaacagttactttttcaagtattactggatttatgctaatgtaatagt 154  Q
    ||||||||||| |||| ||||||| |||||||| |||| |||||||||||| ||||||||| ||| ||||||||||||    
T  14951402 tagtcagatttatagacaaatccagattgacaatagttgctttttcaagtaatactggattaatggtaatgtaatagt 14951479  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 14956085 - 14956119
Alignment:
Q  13 attctcaaaaatgcaatcacaaacaactcaatgga 47  Q
    ||||| |||||||||||||||||||||||||||||    
T  14956085 attctgaaaaatgcaatcacaaacaactcaatgga 14956119  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 14956178 - 14956256
Alignment:
Q  77 tagtcagatttgtagataaatccaaattgacaacagttactttttcaagtattactggatttatgcta-atgtaatagt 154  Q
    |||||||||||  ||| ||||||||||| |||| || |  ||||||||||| ||||||||| |||||| ||||||||||    
T  14956178 tagtcagatttacagacaaatccaaattcacaataggtgttttttcaagtaatactggattaatgctatatgtaatagt 14956256  T

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