View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7452_high_4 (Length: 232)
Name: NF7452_high_4
Description: NF7452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7452_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 4803471 - 4803672
Alignment:
| Q |
18 |
aataatagtataagaacttacaaaatatagaattgttaactagtttaacggatttgagtttaaggtaaaaaacagttcatatacacttcatactaaagtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803471 |
aataatagtataagaacttacaaaatatagaattgttaactagtttaacggatttgagtttaaggtaaaaaacagttcatatacacttcatactaaagtc |
4803570 |
T |
|
| Q |
118 |
ttgagtaacaacacattgttttccaaacatttctccatgagatggtatatgaacttcagccacaaaggtccaggtttaagtgcacccaacagacaaacac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803571 |
ttgagtaacaacacattgttttccaaacatttctccatgagatggtatatgaacttcagccacaaaggtccaggtttaagtgcacccaacagacaaacac |
4803670 |
T |
|
| Q |
218 |
ca |
219 |
Q |
| |
|
|| |
|
|
| T |
4803671 |
ca |
4803672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University