View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7452_low_2 (Length: 421)
Name: NF7452_low_2
Description: NF7452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7452_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 34463908 - 34463520
Alignment:
| Q |
11 |
agaatatagtgctcacttgatgatatgactagaagccaatttgattttatttgtgcacactagataaagccctttaaactttgttattaaggttctcttt |
110 |
Q |
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| T |
34463908 |
agaatatagtgctcacttgatgatatgactagaagccaatttgattttatttgtgcacactagataaagccctttaaactttgttattaaggttctcttt |
34463809 |
T |
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| Q |
111 |
ttcatttagattttgaaatccaagtgcatcaataaataatgattgaaaatctaatatcacaattgatgtccaacacaaacatgacaccgacatgtgttgt |
210 |
Q |
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| T |
34463808 |
ttcatttagattttgaaaaccaagtgcatcaataaataatgattgaaaatctaatatcacaattggtgtccaacacaaacatgacaccgacatgtgttgt |
34463709 |
T |
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| Q |
211 |
tacattcaatcatttctatttgttcaaactattcttgatatttacaatgtttgtggatgtgccaatacttaacatgtcataattaagcataggttttcac |
310 |
Q |
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| T |
34463708 |
tacattcaatcatttttatttgttcaaactattcttgatatttacaatgtttgttgatgtgccaatacttaacatgtcataattaagcatagtttttcac |
34463609 |
T |
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| Q |
311 |
aatatcaatgtcccaaatatgacgagttgttacctcaactagtttgattcaagtgtcaaagaaattaataagttaaaaagttgagggtt |
399 |
Q |
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| T |
34463608 |
aatatcaatgtcccaaatgtgacgaattgttacctcaactagtttgattcaagtgtcaaagaaattaataagttaaaaagttgagggtt |
34463520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 333
Target Start/End: Complemental strand, 34447327 - 34447203
Alignment:
| Q |
210 |
ttacattcaatcatttctatttgttcaaactattcttgatatttacaatgtttgtggatgtgccaatacttaacatgtcataattaagcataggttttca |
309 |
Q |
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| T |
34447327 |
ttacatccaatcaattctatatgttcaaattattcatgttgtttatagtgttcatatatgtgtcaatacttaataggtcataataaagcataatttttca |
34447228 |
T |
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| Q |
310 |
caatatcaatg-tcccaaatatgac |
333 |
Q |
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| T |
34447227 |
caatatcaatgatcccaaatgtgac |
34447203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 34464131 - 34464092
Alignment:
| Q |
11 |
agaatatagtgctcacttgatgatatgactagaagccaat |
50 |
Q |
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| T |
34464131 |
agaatatagtgctcacctgatgatatgactagaagccaat |
34464092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 34447555 - 34447499
Alignment:
| Q |
102 |
gttctctttttcatttagatttt-gaaatccaagtgcatcaataaataatgattgaa |
157 |
Q |
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||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
34447555 |
gttctctatttcttttagattttagaaaatcaagtgcatcaataaataatgattgaa |
34447499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 34436558 - 34436499
Alignment:
| Q |
102 |
gttctctttttcatttagatttt-gaaatccaagtgcatcaataaataatgattgaaaat |
160 |
Q |
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||||||| |||| |||||||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
34436558 |
gttctctatttcttttagattttagaaaatcaagtgcatcactaaataatgattgaaaat |
34436499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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