View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7452_low_3 (Length: 400)
Name: NF7452_low_3
Description: NF7452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7452_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 45047780 - 45047443
Alignment:
| Q |
20 |
ttgacgacatgaacatgttcaaaggggtgttactcttcctcactggtcaggttgatgatcgaaccatccaaaaatatgagaaagaaagctgaggacaaaa |
119 |
Q |
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| T |
45047780 |
ttgacgacatgaacatgttcaaaggcgtgttactcttcctcactggtcaggttgatgatcgaaccatccaaaaatatgagaaagaa-gctgaggacaaaa |
45047682 |
T |
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| Q |
120 |
accgagtaagttgtagagtttttgttggtgattactgaatctgagaatataatctaataaat----gaatgaatccgtctgttttcattttattttactc |
215 |
Q |
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| T |
45047681 |
accgagtaagttgtagagtttttgttggtgattactgaatctgagaatataatctaataaatagttgaatgaatccgtctgttttcattttattttactc |
45047582 |
T |
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| Q |
216 |
tctaaaataaaattgtcaagatgcatggaattttgcaatctatatatcaaactcaaatggggatttgttatgccattgga-ccccactttcgcgaagtct |
314 |
Q |
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| T |
45047581 |
tctaaaataaaattgtcaagatgcatggaattttgcaatttatatatcaaactcaaatggggatttgttatgccattggacccccactttcgcgaagtct |
45047482 |
T |
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| Q |
315 |
cagttcaaactatgatggctaaatgaacacacacgttat |
353 |
Q |
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| T |
45047481 |
cagttcaaactatgatggctaaatgaacacacacgttat |
45047443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 45041809 - 45041741
Alignment:
| Q |
50 |
tactcttcctcactggtcaggttgatgatcgaaccatccaaaaatatgagaaagaaagctgaggacaaaa |
119 |
Q |
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| T |
45041809 |
tacttttcctcagtggtcaggttgatgatcgaactatccaaaaatacgagaaag-aagctaaggacaaaa |
45041741 |
T |
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