View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7452_low_5 (Length: 300)
Name: NF7452_low_5
Description: NF7452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7452_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 27783137 - 27782864
Alignment:
| Q |
7 |
tttcgtgtttccacataagactgcagttttgcatttatttttacctgcaagaggaaatgaaaatggacaattgattcttgtacacagacaaggtaaaatt |
106 |
Q |
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| T |
27783137 |
tttcgtgtttccacataagactgcagctttgcatttacttttacctgaaagaggaaatgaaaatggacaattgattcttgtacacagacaaagtaaaatt |
27783038 |
T |
|
| Q |
107 |
gagaaaaccaaggtttaacctcctctgcaatttgcctttgcaattctgtcttaacagcttcaagcctctcaacttcagctctaagaatcatgagaaacat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27783037 |
gagaaaaccaaggtttaacctcctctgcaatttgcctttgcaattctgtcttaacagcttcaagcctctcaacttcagctctaagaatcatgagaaacat |
27782938 |
T |
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| Q |
207 |
aagttagtggacagagtaagtgnnnnnnnntgataagagtcatttaagtgacttctccatttcaaacgatactct |
281 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27782937 |
aagttagtggacagagtaagtg-aaaaaaatgataagagtcatttaagtgacttctccatttcaaacgatactct |
27782864 |
T |
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