View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7452_low_6 (Length: 293)
Name: NF7452_low_6
Description: NF7452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7452_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 14425067 - 14424796
Alignment:
| Q |
18 |
gcttcattatttctctgagcttatttctaannnnnnngagatggcttcaatttgactttgtgttgtttgcatgtattgggttaggacttcttccaatctc |
117 |
Q |
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| T |
14425067 |
gcttcattatttctctgagcttatttctgatttttttgagatggcttcaatttgactttgtgttgttcgcatgtattgggttaggacttcttccaatctc |
14424968 |
T |
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| Q |
118 |
tttttaggcggctgctggtttgatgtttggggtgggttaagagaattgtttcctctccatgagaagttcagatgttctgtctaacctggattgcaagtgt |
217 |
Q |
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| T |
14424967 |
tttttaggcggatgctggtttgatgtttgaggtgggttaagagaattgtttcctctccatgagaagttcagatgttttgtctacactggattgcaagtgt |
14424868 |
T |
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| Q |
218 |
tgaataaggatttctttgttgcctcgtgtacacacccatgtattttacttgcttcttggataacaccaaact |
289 |
Q |
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| T |
14424867 |
tgaataaggatttctttgttgcctcgtgtacacacccatgtattttacttgcttcttggataaccccaaact |
14424796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 12960723 - 12960856
Alignment:
| Q |
62 |
cttcaatttgactttgtgttgtttgcatgtattgggttaggacttcttccaatctctttttaggcggctgctggtttgatgtttggggtgggttaagaga |
161 |
Q |
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||||||||||||||| | || |||| |||||||||||||| | |||||||| ||||||||| | || | || ||||||||||| | ||| ||||| || |
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| T |
12960723 |
cttcaatttgactttatattttttgaatgtattgggttagcatctcttccaagctctttttaagtggtttttgatttgatgtttgagatggattaaggga |
12960822 |
T |
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| Q |
162 |
attgtttcctctccatgagaagttcagatgttct |
195 |
Q |
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| T |
12960823 |
attatttcttctccatgagaaatttggatgttct |
12960856 |
T |
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