View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7453_high_3 (Length: 375)
Name: NF7453_high_3
Description: NF7453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7453_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 35367826 - 35368124
Alignment:
| Q |
1 |
gttcgcttggatgattgacaagttttatattcctcatgtgtaacacacagggagaaaattagttcaatatatacttgtcatgagattcatgtttgtttta |
100 |
Q |
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| T |
35367826 |
gttcgcttggatgattgaaaagttttatattcctcatgtgtaacacacagggagaaaattagttcaatatatacctgtcatgagattcatgtttgtttta |
35367925 |
T |
|
| Q |
101 |
cataaa-tactataattatttatacatactctggtggagataataattttcatattctgaacccgtaaactttctttacaaagtatgatactgggaagat |
199 |
Q |
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| T |
35367926 |
cataaaatactattattatttatacatactatggtggagataataattttcatattctgaacccgtaaactttctttacaaagtatgatactgggaagat |
35368025 |
T |
|
| Q |
200 |
aatataaagttattaggggtttaatacatatacatcaaatgaccaatccaaattctgcattatttcgaagtctactaatgcagaactttgcaatcaatt |
298 |
Q |
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| T |
35368026 |
aatataaagttattaggggtttaatacatctacatcaaatgaccaatccaaattctgcattatttctaagtctactaatgcagaactttgcaatcaatt |
35368124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 35368147 - 35368208
Alignment:
| Q |
295 |
aattggtgaaagaaatggacaattgaataaagtagaggtttttaacttaatgattgcgcttac |
357 |
Q |
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| T |
35368147 |
aattggtgaaagaaatgga-aattgaataaagtagatgtttttaacttaatgattgcgcttac |
35368208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 10419836 - 10419712
Alignment:
| Q |
174 |
tttacaaagtatgatactgggaagataatataaagttattaggggtttaatacatatacatcaaatgaccaatccaaattctgcattatttcgaagtcta |
273 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
10419836 |
tttacaaaatatgataatgggaagataatataaagttattaggggtttaatacatatacatcaaatgaccaatccaaattctgcatagtttggaagtcta |
10419737 |
T |
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| Q |
274 |
ctaatgcagaactttgcaatcaatt |
298 |
Q |
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| T |
10419736 |
ctaatgcagaactttgcaatcaatt |
10419712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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