View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7453_low_1 (Length: 548)
Name: NF7453_low_1
Description: NF7453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7453_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 21 - 531
Target Start/End: Complemental strand, 5706496 - 5705988
Alignment:
| Q |
21 |
atgtcattgattgagaccacaatttcatcaacttaatcccacaatttcatatttagacctttccataaacttcataaagttgcacaccacataccatgtc |
120 |
Q |
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| T |
5706496 |
atgtcattgattgagaccacaatttcatcaacttaatcccacaatttcatttttagacctttccataaacttcataaagttgcacaccacataccatgtc |
5706397 |
T |
|
| Q |
121 |
tctcttgaggcatgtttttgccaaaaaataatttgacaattcgagcaacatgtaaaatatgtcgtagacatgtcccataatctaatagactttcaagttt |
220 |
Q |
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| T |
5706396 |
tctcttgaggcatgtttttgccaaaaaataatttgacaattccagcaacatgtaaaatatgtcgtagacatgtcccataatctaagagactttcaagttt |
5706297 |
T |
|
| Q |
221 |
ctataccaacagaacaatatatgtcatgcattctcaccataagtacatgatttatgcaggtactatctccaatattccactttggctcctctttcaacaa |
320 |
Q |
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| T |
5706296 |
ctataccaacagaacaatatatgtcatgcattctcaccataagtacatgatttatgcaggtactatctccaatattccactttggctcctctttcaacaa |
5706197 |
T |
|
| Q |
321 |
aacgtgcaatgtgcatatgcttcaccaagtaaaattcaagttattaccaaattctcactttaaggatattactatgtggaaaatatgtggcttccagcac |
420 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5706196 |
aacgtgcaatgtgcatatgcttcaccaagt--aattcaagttattaccaaattctcactttaaggatattactatgtggaaaatatgtggcttcgagcac |
5706099 |
T |
|
| Q |
421 |
ttgagccactaatgaattaggattggtaataatttttccaannnnnnnaggctaagcataactagatttaaagcatataaatttctaaatcccatgcatt |
520 |
Q |
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| T |
5706098 |
ttgagccactaatgaattaggattggtaataatttttccaatttttctaggctaagcataactagatttaaagcatataaacttctaaatcccatgcatt |
5705999 |
T |
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| Q |
521 |
catggtccttt |
531 |
Q |
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| T |
5705998 |
catggtgcttt |
5705988 |
T |
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