View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7453_low_4 (Length: 447)

Name: NF7453_low_4
Description: NF7453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7453_low_4
NF7453_low_4
[»] chr2 (4 HSPs)
chr2 (12-174)||(35337682-35337844)
chr2 (226-431)||(35337896-35338101)
chr2 (27-110)||(33838008-33838091)
chr2 (29-110)||(10643981-10644063)
[»] chr8 (2 HSPs)
chr8 (21-117)||(32392467-32392562)
chr8 (1-67)||(9434885-9434951)
[»] chr1 (6 HSPs)
chr1 (30-121)||(10105187-10105278)
chr1 (30-96)||(10105011-10105077)
chr1 (21-71)||(38733886-38733936)
chr1 (56-117)||(37742840-37742901)
chr1 (31-67)||(34487168-34487204)
chr1 (16-68)||(8679681-8679733)
[»] chr6 (1 HSPs)
chr6 (27-89)||(19366738-19366800)
[»] scaffold0902 (1 HSPs)
scaffold0902 (20-97)||(778-855)
[»] chr4 (5 HSPs)
chr4 (27-96)||(37246769-37246838)
chr4 (37-102)||(50684401-50684466)
chr4 (69-121)||(43228533-43228585)
chr4 (27-103)||(4280735-4280811)
chr4 (19-67)||(5864416-5864464)
[»] scaffold1118 (1 HSPs)
scaffold1118 (19-96)||(531-606)
[»] chr7 (2 HSPs)
chr7 (20-66)||(48327384-48327430)
chr7 (19-103)||(26874262-26874345)
[»] scaffold0113 (1 HSPs)
scaffold0113 (36-68)||(41501-41533)
[»] chr5 (5 HSPs)
chr5 (20-78)||(8453510-8453568)
chr5 (1-67)||(10822712-10822778)
chr5 (37-121)||(35167170-35167255)
chr5 (85-121)||(2412804-2412840)
chr5 (80-120)||(16366526-16366566)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 35337682 - 35337844
Alignment:
Q  12 ttcaactaaatgatatggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctacatacgagacg 111  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35337682 ttcaactaaatgatttggttgttcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaaataattttctacatacgagacg 35337781  T
Q  112 agtttgggtagggttcagggttgacacttgtatcttcataactcatcttgtacatatgttttg 174  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  35337782 agtttgggtagggttcagggttgatacttgtatcttcgtaactcatcttgtacatatgttttg 35337844  T

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Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 35337896 - 35338101
Alignment:
Q  226 gagttggttcgaatgagtaaccgcgagtatgtgtttttctgccatgcctagatattataacttgttcaaacacgtaatgtacacccaagtggcaaagctc 325  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  35337896 gagttggtttgaatgagtaaccgcgaatatgtgtttttctgccatgcctagatattacaacttgttcaaacacgtaatgtacacaaaagtggcaaagctc 35337995  T
Q  326 tcaaaccgttttgttgagtttgaggatcatccgcattagatcaaaaagannnnnnnnngtccttttgtcgaatatgactctaatactcactttaa-tact 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||||||||||||||| |||||||||| ||||    
T  35337996 tcaaaccgttttgttgagtttgaggatcatccgcattagatcaaaaaga-ttttttttgtctttttgtcgaatatgactctaatgctcactttaattact 35338094  T
Q  425 ttctttt 431  Q
    |||||||    
T  35338095 ttctttt 35338101  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 33838091 - 33838008
Alignment:
Q  27 tggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctacatacgagac 110  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||||| ||||||||| |||||||||||||| || ||||||    
T  33838091 tggttgctcctttaaatatcaataacattttttataacatgacaaatatcaatgagtaaaaaagtaattttctaaattcgagac 33838008  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 10644063 - 10643981
Alignment:
Q  29 gttgctcctttaaatatcaattgcaaattttataacatgacaaatatta-atgagtaataaagtaattttctacatacgagac 110  Q
    ||||||| ||||||| |||||  |||||||||||||||||||||| | |  |||||||||||||||||||| |||| ||||||    
T  10644063 gttgctcttttaaatttcaatgacaaattttataacatgacaaatctcacttgagtaataaagtaattttccacattcgagac 10643981  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 32392562 - 32392467
Alignment:
Q  21 atgatatggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctacatacgagacgagtttg 117  Q
    ||||| |||||||| ||||||||||||||||||| ||| || ||||||||||||| |||| |||||||| ||||||||||||| ||| ||| |||||    
T  32392562 atgatttggttgctactttaaatatcaattgcaagtttgatgacatgacaaatatcaatg-gtaataaaataattttctacattcgatacgtgtttg 32392467  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9434885 - 9434951
Alignment:
Q  1 tttagcatttcttcaactaaatgatatggttgctcctttaaatatcaattgcaaattttataacatg 67  Q
    |||| |||||| |||||  |||||| |||||||||||||||| |||||  |||| ||||||||||||    
T  9434885 tttaacatttcctcaacataatgatttggttgctcctttaaaaatcaaaggcaatttttataacatg 9434951  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 10105187 - 10105278
Alignment:
Q  30 ttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctacatacgagacgagtttgggta 121  Q
    ||||| ||||||||| ||||  ||  |||||||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||    
T  10105187 ttgctactttaaataacaatgacaggttttataacatggcaaatatcaatgagtaataaagtaattttttacattcgaaacgagtttgggta 10105278  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 10105011 - 10105077
Alignment:
Q  30 ttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattt 96  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |||||||    
T  10105011 ttgctcttttaaatatgaattgcaaattttataacatggcaaatatcaatgtgtaataatgtaattt 10105077  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 38733886 - 38733936
Alignment:
Q  21 atgatatggttgctcctttaaatatcaattgcaaattttataacatgacaa 71  Q
    |||||||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  38733886 atgatatggttgcttctttaaatatcaatgacaatttttataacatgacaa 38733936  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 37742901 - 37742840
Alignment:
Q  56 ttttataacatgacaaatattaatgagtaataaagtaattttctacatacgagacgagtttg 117  Q
    |||||||||||| ||||| ||||||||||||||| ||||||| |||||  ||||||| ||||    
T  37742901 ttttataacatgtcaaatcttaatgagtaataaaataattttttacatttgagacgaatttg 37742840  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 34487204 - 34487168
Alignment:
Q  31 tgctcctttaaatatcaattgcaaattttataacatg 67  Q
    |||| ||||||||||||||||||||||||||||||||    
T  34487204 tgcttctttaaatatcaattgcaaattttataacatg 34487168  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 8679733 - 8679681
Alignment:
Q  16 actaaatgatatggttgctcctttaaatatcaattgcaaattttataacatga 68  Q
    |||||||||| || ||||||||||||||||||||   || |||||||||||||    
T  8679733 actaaatgatttgattgctcctttaaatatcaatgataatttttataacatga 8679681  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 19366738 - 19366800
Alignment:
Q  27 tggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaa 89  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||    
T  19366738 tggttgctcctttaaatatcaattgcaatttttttaaaatgacaaatatcaatgagtaataaa 19366800  T

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Target: scaffold0902 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 778 - 855
Alignment:
Q  20 aatgatatggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaatttt 97  Q
    |||||| |||||||| |||||||||||||| | |  |||||||||||||||||||| |||||| ||||||||||||||    
T  778 aatgatttggttgctactttaaatatcaatggtaggttttataacatgacaaatatcaatgaggaataaagtaatttt 855  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 37246769 - 37246838
Alignment:
Q  27 tggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattt 96  Q
    ||||||||| | ||||||||||| |||  |||||||||||||||||||| ||||||||||||||||||||    
T  37246769 tggttgctcttataaatatcaatggcaggttttataacatgacaaatatcaatgagtaataaagtaattt 37246838  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 50684401 - 50684466
Alignment:
Q  37 tttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctaca 102  Q
    ||||||||||||||||||||||||||||||||||||||| |||   ||||||||||| ||||||||    
T  50684401 tttaaatatcaattgcaaattttataacatgacaaatataaatagataataaagtaaatttctaca 50684466  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 43228585 - 43228533
Alignment:
Q  69 caaatattaatgagtaataaagtaattttctacatacgagacgagtttgggta 121  Q
    ||||||| |||||||||| |||||||||||||||| ||| ||| |||||||||    
T  43228585 caaatatcaatgagtaattaagtaattttctacattcgaaacgggtttgggta 43228533  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 4280811 - 4280735
Alignment:
Q  27 tggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctacat 103  Q
    ||||||||||||||||| | ||| |||| | ||||||||||  |||| | |||  |||||||||||||| |||||||    
T  4280811 tggttgctcctttaaatttaaatggcaattattataacatggaaaatctcaattggtaataaagtaattatctacat 4280735  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 5864464 - 5864416
Alignment:
Q  19 aaatgatatggttgctcctttaaatatcaattgcaaattttataacatg 67  Q
    ||||||| ||||||||| ||||||||| ||| |||| ||||||||||||    
T  5864464 aaatgatttggttgctcttttaaatataaatggcaatttttataacatg 5864416  T

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Target: scaffold1118 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 531 - 606
Alignment:
Q  19 aaatgatatggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattt 96  Q
    ||||||| |||||| | |||||||||| ||| ||   |||||||||||||||||||| ||||||||||||||||||||    
T  531 aaatgatttggttgttactttaaatataaatggcg--ttttataacatgacaaatatcaatgagtaataaagtaattt 606  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 48327384 - 48327430
Alignment:
Q  20 aatgatatggttgctcctttaaatatcaattgcaaattttataacat 66  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||    
T  48327384 aatgatttggttgcttctttaaatatcaattgcaaattttataacat 48327430  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 26874262 - 26874345
Alignment:
Q  19 aaatgatatggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaagtaattttctacat 103  Q
    ||||||| || ||||||||||||||||||||  ||  ||||||||  ||| |||||| |||||||||||||||| ||||||||||    
T  26874262 aaatgatttgcttgctcctttaaatatcaatgacactttttataaattga-aaatatcaatgagtaataaagtagttttctacat 26874345  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 41533 - 41501
Alignment:
Q  36 ctttaaatatcaattgcaaattttataacatga 68  Q
    |||||||||||||||||||||||||||||||||    
T  41533 ctttaaatatcaattgcaaattttataacatga 41501  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 8453568 - 8453510
Alignment:
Q  20 aatgatatggttgctcctttaaatatcaattgcaaattttataacatgacaaatattaa 78  Q
    |||||| | ||| ||||||||||||||||| | || |||||||||||||||| ||||||    
T  8453568 aatgatttagttactcctttaaatatcaatggtaatttttataacatgacaattattaa 8453510  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10822778 - 10822712
Alignment:
Q  1 tttagcatttcttcaactaaatgatatggttgctcctttaaatatcaattgcaaattttataacatg 67  Q
    |||| |||||||| |||  |||||| |||||||||||||||| |||||  |||| ||||||||||||    
T  10822778 tttaacatttctttaacataatgatttggttgctcctttaaaaatcaaaggcaatttttataacatg 10822712  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 35167170 - 35167255
Alignment:
Q  37 tttaaatatcaattgcaaattttataacatgac-aaatattaatgagtaataaagtaattttctacatacgagacgagtttgggta 121  Q
    |||||||||| || ||||||||||||||||| | |||||| |||  || ||||||||||| ||||||| | ||| | |||||||||    
T  35167170 tttaaatatccatagcaaattttataacatggcaaaatatcaatcggtgataaagtaattgtctacattcaagatgtgtttgggta 35167255  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 2412840 - 2412804
Alignment:
Q  85 ataaagtaattttctacatacgagacgagtttgggta 121  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  2412840 ataaagtaattttctgcatacgggacgagtttgggta 2412804  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 16366566 - 16366526
Alignment:
Q  80 gagtaataaagtaattttctacatacgagacgagtttgggt 120  Q
    |||||||||| ||||||||||||| || |||||||||||||    
T  16366566 gagtaataaaataattttctacattcgggacgagtttgggt 16366526  T

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