View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7453_low_6 (Length: 314)
Name: NF7453_low_6
Description: NF7453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7453_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 33115129 - 33114838
Alignment:
| Q |
1 |
ttgctatgaaactgtgacacctacacgagacatggcactaacacttcaacgccgttgatagtttgnnnnnnntggaaatttgaaggttggtgctacatag |
100 |
Q |
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| T |
33115129 |
ttgctatgaaactgtgacacctacacgagacatggcactaacacttcaacgccgatgatagtttgaaaaaaatggaaatttgaaggttggtgctacatag |
33115030 |
T |
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| Q |
101 |
gtaatttcatcaagggtgctaccatgtgcccttgccataagggcacatgttaaggtacttgaatgtagaaattttgcattgaaaagagcagcttttggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33115029 |
gtaatttcatcaagggtgctaccatgtgcccttgccataagggcacatgttaaggtacttgaatgtagaaattttgcattgaaaagagcagcttttggac |
33114930 |
T |
|
| Q |
201 |
atttaagaaattgatcacacaactgtagnnnnnnnnngttttgaaggataatgtatgtagtttcttaacattaagggcacatgttagtttcatc |
294 |
Q |
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||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33114929 |
atttaagaaattgattacacaactgtagtttttttt--tttttaaggataatgtatgtagtttcttaacattaagggcacatgttagtttcatc |
33114838 |
T |
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