View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7454_low_2 (Length: 248)
Name: NF7454_low_2
Description: NF7454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7454_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 32065009 - 32064796
Alignment:
| Q |
14 |
aaatattccattctccaatggacaaccaaaacattgattatcctcacaaagcccaaattccccacatctctctggcaattgacactcactctcatctaga |
113 |
Q |
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| T |
32065009 |
aaatattccattctccaatggacaaccaaaacattgattatcctcacaaagcccaaattccccacatctctctggcaattgacactcactctcatctaga |
32064910 |
T |
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| Q |
114 |
tcttcatcttcatcaaagagagtgaatgtcactttccaaacaccactacgtacatctaggaagtaagtgtgaaattgaatgttaccatcaattccaagcc |
213 |
Q |
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| T |
32064909 |
tcttcatcttcatcaaagagagtgaatgtcactttccaaacaccactgcgtacatctagaaagtaagtgtgaaattgaatgttaccatcaattccaagcc |
32064810 |
T |
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| Q |
214 |
taagatatgttaag |
227 |
Q |
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|||||||||||||| |
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| T |
32064809 |
taagatatgttaag |
32064796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 32031869 - 32031661
Alignment:
| Q |
14 |
aaatattccattctccaatggacaaccaaaacattgattatcctcacaaagcccaaattccccacatctctctggcaattga-cactcactctcatctag |
112 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||| |
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| T |
32031869 |
aaatattccattctccaatggacaaccaacacattgattatcctcacaaagcccaaatttcccacatctctcaggcaattgggcactcaccctcatct-- |
32031772 |
T |
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| Q |
113 |
atcttcatcttcatcaaagagagtgaatgtcactttccaaacaccactacgtacatctaggaagtaagtgtgaaattgaatgttaccatcaattccaagc |
212 |
Q |
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| T |
32031771 |
----tcatcttcatcaaagagagtgtatgtcactttccaaacaccactacgcacatcaaggaagtaggtgtgaaatttaatattaccatcaattccaagc |
32031676 |
T |
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| Q |
213 |
ctaagatatgttaag |
227 |
Q |
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||||||||||||||| |
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| T |
32031675 |
ctaagatatgttaag |
32031661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 32072331 - 32072129
Alignment:
| Q |
18 |
attccattctccaatggacaaccaaaacattgattatcctcacaaagcccaaattccccacatctctctggcaattgacactcactctcatctagatctt |
117 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| | ||| |
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| T |
32072331 |
attccattctccaaaggacaaccaacacattgattatcctcacaaagcccaaattttccacatctctttggcaattgacattcactctcatcaaaatc-- |
32072234 |
T |
|
| Q |
118 |
catcttcatcaaagagagtgaatgtcactttccaaacaccactacgtacatctaggaagtaagtgtgaaattgaatgttaccatcaattccaagcctaag |
217 |
Q |
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| T |
32072233 |
--tct--atcaaagagagtgtatgtcactttccaaacaccatcttgaacatctagaaaatatgtgtaaaatctgatgttaccatcaattccaagcctaag |
32072138 |
T |
|
| Q |
218 |
atatgttaa |
226 |
Q |
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||||||||| |
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| T |
32072137 |
atatgttaa |
32072129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 32078703 - 32078654
Alignment:
| Q |
177 |
taagtgtgaaattgaatgttaccatcaattccaagcctaagatatgttaa |
226 |
Q |
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|||||||||| || |||||||||||||||||||||||| |||||||||| |
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| T |
32078703 |
taagtgtgaattttaatgttaccatcaattccaagccttggatatgttaa |
32078654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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