View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7455_high_1 (Length: 527)
Name: NF7455_high_1
Description: NF7455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7455_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Original strand, 14665608 - 14666111
Alignment:
| Q |
17 |
aaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttggcagttattaagttacatagtaagaaattccttgcacaagaagttat |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14665608 |
aaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttgacagttattaagttacatagtaagaaattccttgcacaaaaagttat |
14665707 |
T |
|
| Q |
117 |
tgtaactagtttcaaatttaatactttctagctgataactcacttatacttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14665708 |
tgtaactagtttcaaatttaatactttctagctgataactcacttatacttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagct |
14665807 |
T |
|
| Q |
217 |
aataaaatggtggttaggtttcaactttcaatcaatgttactgtagtgatttactacaatcaatatattctataaaaggaacaaatatggcaatgcatga |
316 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14665808 |
aataaactgggggttaggtttcaactttcaatcaatgttattgtagtgatttactacaatcaatatattctataaaaggaacaaatatagcaatgcatga |
14665907 |
T |
|
| Q |
317 |
agctcctaagtatacaccttttgttctta-tttgtttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgc |
415 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14665908 |
agctcctaagtatacaccttttgttctaattttttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgc |
14666007 |
T |
|
| Q |
416 |
ttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaattagaacattccaaccttcaaataatagcctttcacaattca |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14666008 |
ttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacattgaattagaacattccaaccttcaaataatagcctttcacaattca |
14666107 |
T |
|
| Q |
516 |
tctc |
519 |
Q |
| |
|
|||| |
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|
| T |
14666108 |
tctc |
14666111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 275 - 503
Target Start/End: Complemental strand, 14673121 - 14672893
Alignment:
| Q |
275 |
atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgtttactatacactatatgtcaggaa |
374 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
14673121 |
atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa |
14673022 |
T |
|
| Q |
375 |
tcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaat |
474 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| | ||||| |
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|
| T |
14673021 |
tcacttgcctcgttcaatcccattgataattatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaat |
14672922 |
T |
|
| Q |
475 |
tagaacattccaaccttcaaataatagcc |
503 |
Q |
| |
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| |||||||| || ||||||||||||||| |
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|
| T |
14672921 |
tcgaacattcaaatcttcaaataatagcc |
14672893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 275 - 503
Target Start/End: Complemental strand, 14678499 - 14678271
Alignment:
| Q |
275 |
atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgtttactatacactatatgtcaggaa |
374 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
14678499 |
atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa |
14678400 |
T |
|
| Q |
375 |
tcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaat |
474 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| | ||||| |
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|
| T |
14678399 |
tcacttgcctcgttcaatcccattgataattatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaat |
14678300 |
T |
|
| Q |
475 |
tagaacattccaaccttcaaataatagcc |
503 |
Q |
| |
|
| |||||||| || ||||||||||||||| |
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|
| T |
14678299 |
tcgaacattcaaatcttcaaataatagcc |
14678271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 294 - 509
Target Start/End: Complemental strand, 14687781 - 14687566
Alignment:
| Q |
294 |
ggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgtttactatacactatatgtcaggaatcacttgcctcgttcaatc |
393 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||| | ||| ||||||||| ||||||| ||||||| |
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|
| T |
14687781 |
ggaacaaatatggcaatgcatcaagttcctaagtatacaccttttgttctaattcttttactatactccgcatgccaggaatcatttgcctcattcaatc |
14687682 |
T |
|
| Q |
394 |
ccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaattagaacattccaaccttca |
493 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| || | |||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
14687681 |
ccatcgataattatttggtcacttgtggttcatcttataatatcacatttcagggtcgaactttcatacctgacattgaattcgaacattccaaccttca |
14687582 |
T |
|
| Q |
494 |
aataatagcctttcac |
509 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
14687581 |
aataatagcctttcac |
14687566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 14687941 - 14687785
Alignment:
| Q |
73 |
gttattaagttacatagtaagaaattccttgcacaagaagttattgtaactagtttcaaatttaatactttctagctgataactcacttatacttcaaca |
172 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
14687941 |
gttattaagttacatagtaagaaattacttgcacaagaagttattgtaactagtttcaaatttaatacattctagctgataacgcacttatacttcaaca |
14687842 |
T |
|
| Q |
173 |
atatt-------agttcaaacaaaatctttatagcaagagcttcagtagctaataaa |
222 |
Q |
| |
|
||| | | |||||||||||||| ||||| ||||||||| |||||||||||| |
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|
| T |
14687841 |
atactaattcaaacttcaaacaaaatctatatagaaagagcttcggtagctaataaa |
14687785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 147 - 519
Target Start/End: Complemental strand, 30735422 - 30735049
Alignment:
| Q |
147 |
gctgataactcacttatacttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaaatggtggttaggtttcaactttca |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30735422 |
gctgataactcacttatacttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataatctggtggttaggtttcaactttca |
30735323 |
T |
|
| Q |
247 |
atcaatgttactgtagtgatttactacaatcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttctta- |
345 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
30735322 |
atcaatgttattgtagtgatttactacaatcaatatattctataaaaggaacaaatattgcaatgcatgaagctcctaagtatacaccttttgttctaat |
30735223 |
T |
|
| Q |
346 |
tttgtttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttga |
445 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30735222 |
tttttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttga |
30735123 |
T |
|
| Q |
446 |
gggtcgaactttcatacctgacactgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
519 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30735122 |
gggtcgaactttcatacctgacattgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
30735049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 336 - 498
Target Start/End: Original strand, 24057064 - 24057226
Alignment:
| Q |
336 |
tttgttcttatttgtttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataaca |
435 |
Q |
| |
|
|||||||||||| ||||||| || | ||||| ||||||| | ||||||||| ||||||| |||||||||||||||||||||||||| || || || |
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|
| T |
24057064 |
tttgttcttattcttttactaaacgtcacatgtcgggaatcattcgcctcgttccatcccattgataattatttggtcgcttgtggttcttcccacaatg |
24057163 |
T |
|
| Q |
436 |
taaaatttgagggtcgaactttcatacctgacactgaattagaacattccaaccttcaaataa |
498 |
Q |
| |
|
| | ||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
24057164 |
tcacgtttcagggtcgaactttcgtacctgacactgaatttgaacattccaactttcaaataa |
24057226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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