View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7455_high_2 (Length: 271)
Name: NF7455_high_2
Description: NF7455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7455_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 53953267 - 53953493
Alignment:
| Q |
4 |
gagtttggagtttattttgtggtgcatctttgtaattgtcgcgtctttttctcattgttacaatttagatgttgaaatcatatgagattgagaagaaggg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53953267 |
gagtttggagtttattttgtggtgcatctttgtaattgtcgcgtctttttctcattgttacaatttagatgttgaaatcatatgagattgagaaggaggg |
53953366 |
T |
|
| Q |
104 |
atgtgaatcgccggcggcctgtgacagattgatgtgaggcggagggaggagatggaaggttatggcggcgtacggcgtcggaaactggtggtggtgggct |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53953367 |
atgtgaatcgccggcggcctgtgatagattgatgtgaggcggagggaggagatggaaggttatggcggcgtacggcgtcggaaactggtggtggcgggct |
53953466 |
T |
|
| Q |
204 |
ttgggtcgaagaggcaacggaggttgt |
230 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
53953467 |
ttgggtcgaagaggcaatggaggttgt |
53953493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 5723481 - 5723426
Alignment:
| Q |
83 |
atatgagattgagaagaagggatgtgaatcgccggcggcctgtgacagattgatgt |
138 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5723481 |
atatgagattgagaaggatggatgtgaatctccggcggcctgtgacagattgatgt |
5723426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 33294419 - 33294474
Alignment:
| Q |
83 |
atatgagattgagaagaagggatgtgaatcgccggcggcctgtgacagattgatgt |
138 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33294419 |
atatgagattgagaaagatggatgtgaatctccggcggcctgtgacagattgatgt |
33294474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 32838362 - 32838307
Alignment:
| Q |
83 |
atatgagattgagaagaagggatgtgaatcgccggcggcctgtgacagattgatgt |
138 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
32838362 |
atatgagattgagaaggatggatgtgaatctccgacgccctgtgacagattgatgt |
32838307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 5913204 - 5913255
Alignment:
| Q |
87 |
gagattgagaagaagggatgtgaatcgccggcggcctgtgacagattgatgt |
138 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
5913204 |
gagaatgagaaggagggatgtgaatagccggcggcctgtgataaattgatgt |
5913255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 48577650 - 48577701
Alignment:
| Q |
87 |
gagattgagaagaagggatgtgaatcgccggcggcctgtgacagattgatgt |
138 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
48577650 |
gagattgagaaggagggatgtgaatagccggcggcctgtgataaattgatgt |
48577701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University