View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7455_low_2 (Length: 467)
Name: NF7455_low_2
Description: NF7455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7455_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 393
Target Start/End: Original strand, 16855118 - 16855490
Alignment:
| Q |
21 |
atcctcttcaacaattatatgacgattttcttgaattctttttccttgccctaaattgccatttggtaataacaatttagacaaatatccacagattcat |
120 |
Q |
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| T |
16855118 |
atcctcttcaacaattatatgacgattttcttgaattctttttccttgccctaaattgccatttggtaataacaatttagacaaatatccacagattcat |
16855217 |
T |
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| Q |
121 |
ctttttgcnnnnnnntctagctaaccatttcaaatgaagttctcttccgacaatattttctccatttataaaatttgaacatgagactttacttaaaata |
220 |
Q |
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| T |
16855218 |
ctttttgcaaaaaaatctagctaaccatttcaaatgaagttctcttccgaccatattttctccatttataaaatttgaacatgagactttacttaaaata |
16855317 |
T |
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| Q |
221 |
tcttactgttatttggcttctattgggcatgagaatattataaatgatagtaatcattaatgaaattttagagttaatttcatattaataaaactttttg |
320 |
Q |
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| T |
16855318 |
tcttactgttatttggcttctattgggcatgaggatattataaatgatagtaatcattaatgaaattttagagttaacttcatattaataaaactttttg |
16855417 |
T |
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| Q |
321 |
atcatattcaccagttgggtcaacagatgataccttttcaaagaagataaaatcattcttagacttttagatg |
393 |
Q |
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| T |
16855418 |
atcttattcaccagttgggtccacagatgatgccttttcaaagaagataaaatcattcttagacttttagatg |
16855490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 17520288 - 17520372
Alignment:
| Q |
136 |
tctagctaaccatttcaaatgaagttctcttccgacaatattttctccatttataaaatttgaacatgagactttacttaaaata |
220 |
Q |
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| T |
17520288 |
tctagctaaccttctcaaatgaagttcactttcgaccatattttctccattcattaaatttgaacatgagactttacttataata |
17520372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 393
Target Start/End: Original strand, 17523603 - 17523679
Alignment:
| Q |
316 |
ttttgatcatattcaccagttgggtcaacagatgataccttttcaaagaagataaaatcattcttagacttttagatg |
393 |
Q |
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| T |
17523603 |
ttttgatcttattcacctgttgg-tccacaaatgataccctttcagagaagataaaatcattcttaaatttttagatg |
17523679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 17520453 - 17520486
Alignment:
| Q |
231 |
atttggcttctattgggcatgagaatattataaa |
264 |
Q |
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| T |
17520453 |
atttggcttctattgggcatgagaatattataaa |
17520486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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