View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7455_low_4 (Length: 356)
Name: NF7455_low_4
Description: NF7455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7455_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 53046267 - 53045940
Alignment:
| Q |
18 |
agaatggccactacaaacagacaagatgacatactgagttaacttgtatagcttgcatactctctggtccagagccctggatgcgaaataatgcaacacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53046267 |
agaatggccactacaaacagacaagatgacatactgagttaacttgtatagcttgcatactctctggtccagagccctggatgcgaaataatgcaacacc |
53046168 |
T |
|
| Q |
118 |
atcttccttgtatgtctcgtctggaatttcattctccgcaatgtaattcttatatgcatcactaagtccgccctgatggacaattgaaataaatgaccag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53046167 |
atcttccttgtatgtctcgtctggaatttcattctccgcaatgtaattcttatatgcatcactaagtccgccctgatggacagttgaaataaatgaccag |
53046068 |
T |
|
| Q |
218 |
tattaaataaaaaataattcaagcgataaaatagctttttctagttacaccaatcaaaatccaacaaaccttaaaaacaatcaagctttggaggatggaa |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53046067 |
tattaaataaaaaataattcaagctataaaatagctttttctagttacaccaatcaaaatccaacaaaccttaaaaacaatcaagctttggaggatggaa |
53045968 |
T |
|
| Q |
318 |
taaaattgaattgtttcactgccttcat |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
53045967 |
taaaattgaattgtttcactgccttcat |
53045940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 15960946 - 15961082
Alignment:
| Q |
58 |
aacttgtatagcttgcatactctctggtccagagccctggatgcgaaataatgcaacaccatcttccttgtatgtctcgtctggaatttcattctccgca |
157 |
Q |
| |
|
||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||| | || || ||||||||||| || |||||||| || |||||| |
|
|
| T |
15960946 |
aacttgtatagcttgcatattatcaggtccagtgccctggatgcggaataatgcaacgctgtcctcattgtatgtctcatcaggaatttccttttccgca |
15961045 |
T |
|
| Q |
158 |
atgtaattcttatatgcatcactaagtccgccctgat |
194 |
Q |
| |
|
|||||| |||| ||| |||||||||| || ||||||| |
|
|
| T |
15961046 |
atgtaagtcttgtatccatcactaagccctccctgat |
15961082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University