View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7455_low_9 (Length: 251)
Name: NF7455_low_9
Description: NF7455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7455_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 33542231 - 33542437
Alignment:
| Q |
28 |
aataaataaataaatagtacctagatgaaggttctagatgaacaacaagaccatcaacctcattgaaaacattggaaatggaagccttaagagctttaga |
127 |
Q |
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| T |
33542231 |
aataaataaataaatagtacctagatgaaggttctagatgaacaacaagaccatcaacctcattgaaaacattggaaatggaagccttaagagctttaga |
33542330 |
T |
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| Q |
128 |
aggacacaaaagattttcctgtttgcaaaggaaaacaataacatcaaccatacaaattttcccaacacattgacattgaccgaattcagagtggtcacag |
227 |
Q |
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| T |
33542331 |
aggacacaaaagattttcctgtttgcaaaggaaaacaataacatcaaccatacaaattttcccaacacattgacattgaccgaattcagagtggtcacag |
33542430 |
T |
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| Q |
228 |
ttccaaa |
234 |
Q |
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||||||| |
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| T |
33542431 |
ttccaaa |
33542437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 33554634 - 33554825
Alignment:
| Q |
43 |
agtacctagatgaaggttctagatgaacaacaagaccatcaacctcattgaaaacattggaaatggaagccttaagagctttagaaggacacaaaagatt |
142 |
Q |
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| T |
33554634 |
agtacctagaagaagattcaagctgaacaacaagaccaccaaccttaggcaaaactacagaaaccaaagcattaagagctttagaaggacacaaaagatt |
33554733 |
T |
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| Q |
143 |
ttcctgtttgcaaaggaaaacaataacatcaaccatacaaattttcccaacacattgacattgaccgaattcagagtggtcacagttccaaa |
234 |
Q |
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| T |
33554734 |
ttctggtttgcaaaggtaacaaataacatcaaccatgcaaactttcccaacacattgacaacgagtgaattcagaatggtcacagctccaaa |
33554825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 15048294 - 15048322
Alignment:
| Q |
18 |
taaataaacaaataaataaataaatagta |
46 |
Q |
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| T |
15048294 |
taaataaacaaataaataaataaatagta |
15048322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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