View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7456_high_1 (Length: 506)
Name: NF7456_high_1
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 189 - 493
Target Start/End: Complemental strand, 43997033 - 43996742
Alignment:
| Q |
189 |
gtcaaataattggaatcaaaagtttcgctatcaacacttcccttttcgccgcactctacattcctctcacatcactttcaatgcctctcgccatttcttc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43997033 |
gtcaaataattggaatcaaaagtttcgctatcaacacttcccttttcgccgcactctacattcct---------------------ctcgccatttcttc |
43996955 |
T |
|
| Q |
289 |
cctaaggcccaaggcaaagcccagccaagcggcggttacaaacgccccgaactcaaagcttaactccgatgagattctcacacgtggcgaatctgcacta |
388 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43996954 |
cctaaggcccaaggccaagcccagccaagcggcggttacaaacgccccgaactcaaagtttaactccgatgagattctcacacgtggcgaatctgcacta |
43996855 |
T |
|
| Q |
389 |
gacttgattgat--------tgataaagcagttcgttgaaatcactaagttctaaccggtgacgaaacaaagtggtggtaaactctattatgaagctgct |
480 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43996854 |
gacttgattgattgattgattgataaagcagttcgttgaaatcactaagttctaaccggtgacgaaacaaagtggtggtaaactctattatgaagctgct |
43996755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 43997226 - 43997103
Alignment:
| Q |
1 |
tggaacactttgttcacatattttcattactatatatactactactacacaaaatagtaaa------------aaacctaatactaatcttaggtctatg |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43997226 |
tggaacactttgttcacatattttcattactatatatacta---ctacacaaaatagtaaaaaacctaatactaaacctaatactaatcttaggtctatg |
43997130 |
T |
|
| Q |
89 |
tcatcatcttgtttctctaatgttcgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43997129 |
tcatcatcttgtttctctaatgttcgc |
43997103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 32068043 - 32068134
Alignment:
| Q |
213 |
tcgctatcaacacttcccttttcgccgcactctacattcctctcacatcactttcaat---gcctctcgccatttcttccctaaggcccaag |
301 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||| |||||||||| |||||||| |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
32068043 |
tcgctatccacacctcccttttcgtcgcactctccattcctctcccatcacttccaataatgcctctcgccatttcttccctaagacccaag |
32068134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 32068215 - 32068261
Alignment:
| Q |
350 |
aactccgatgagattctcacacgtggcgaatctgcactagacttgat |
396 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
32068215 |
aactccgaccagattcttacacgtggcgaatccgcactagacttgat |
32068261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 493
Target Start/End: Original strand, 32068315 - 32068359
Alignment:
| Q |
446 |
aacaaagtggtggtaaactctattatgaagctgcttgtttgttgaaat |
493 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
32068315 |
aacaaagtggtggtaaactatat---gaagctgcttgtttgttgaaat |
32068359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University