View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7456_high_2 (Length: 358)

Name: NF7456_high_2
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7456_high_2
NF7456_high_2
[»] chr3 (3 HSPs)
chr3 (147-358)||(12215651-12215862)
chr3 (263-334)||(13811113-13811184)
chr3 (196-249)||(13811069-13811122)
[»] chr7 (2 HSPs)
chr7 (147-334)||(9805689-9805876)
chr7 (196-334)||(9691501-9691642)
[»] chr8 (2 HSPs)
chr8 (196-358)||(2499489-2499651)
chr8 (241-354)||(2503876-2503989)
[»] scaffold0008 (1 HSPs)
scaffold0008 (196-334)||(116014-116155)
[»] chr4 (1 HSPs)
chr4 (196-334)||(13557878-13558019)
[»] scaffold0186 (1 HSPs)
scaffold0186 (205-334)||(30468-30607)
[»] chr6 (1 HSPs)
chr6 (205-334)||(22043048-22043181)
[»] chr2 (1 HSPs)
chr2 (205-334)||(44353427-44353560)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 12215862 - 12215651
Alignment:
Q  147 ctttctccatctttctccacgcgaactgctttctccatctctcactctccgacggccaatagctctctctccgtcatttgctccgacggcccgtagctct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12215862 ctttctccatctttctccacgcgaactgctttctccatctctcactcaccgacggccaatagctctctctccgtcatttgctccgacggcccgtagctct 12215763  T
Q  247 ctctccataccgtgattagctctctcgatctccttcctccttcctctgcacgaatcactttctccatctctctttccgtcgccgaatcgtcggatctctc 346  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   |||||     
T  12215762 ctctccataccgtgattagctcttccgatctccttcctccttcctctacacgaatcactttctccatctctctttccgtcgccgaatcgccaagtctctt 12215663  T
Q  347 cgttaaaggtga 358  Q
    ||||||||||||    
T  12215662 cgttaaaggtga 12215651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 13811113 - 13811184
Alignment:
Q  263 tagctctctcgatctccttcctccttcctctgcacgaatcactttctccatctctctttccgtcgccgaatc 334  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  13811113 tagctctctcgatctccttcctccttcctctgtacgaatcactttctccatctctctttccgtcgctgaatc 13811184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 13811069 - 13811122
Alignment:
Q  196 cgacggccaatagctctctctccgtcatttgctccgacggcccgtagctctctc 249  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13811069 cgacggcgaatatctctctctccatcatttgctccgacggcccgtagctctctc 13811122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 9805876 - 9805689
Alignment:
Q  147 ctttctccatctttctccacgcgaactgctttctccatctctcactctccgacggccaatagctctctctccgtcatttgctccgacggcccgtagctct 246  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||    
T  9805876 ctttctccatctttctccatgcgaactgctttctccatctctcactctccgatggccaatagctctctctccgtcatttgctccgacggcccgtaattct 9805777  T
Q  247 ctctccataccgtgattagctctctcgatctccttcctccttcctctgcacgaatcactttctccatctctctttccgtcgccgaatc 334  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9805776 ctctccataccctgattagctctctcgatctccttcctccttcctctgcacgaatcactttctccatctctctttccttcgccgaatc 9805689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 9691642 - 9691501
Alignment:
Q  196 cgacggccaatagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccgtgattagctctctcgatctccttcctccttcctc 292  Q
    |||||||  |||||||||||||||||||||| |||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  9691642 cgacggcagatagctctctctccgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatctccttcgcccttcctc 9691543  T
Q  293 tgcacgaatcactttctccatctctctttccgtcgccgaatc 334  Q
    || | |||||| ||||||| |||||||||| |||||||||||    
T  9691542 tgtatgaatcagtttctccttctctctttctgtcgccgaatc 9691501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 358
Target Start/End: Original strand, 2499489 - 2499651
Alignment:
Q  196 cgacggccaatagctctctctccgtcatttgctccgacggcccgtagctctctctccataccgtgattagctctctcgatctccttcctccttcctctgc 295  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||      
T  2499489 cgacggccaatagctctttctccgtcatttgctccgacggcccgtagctctctctccataccctggttagctctctcgatctccttcctccttcatctct 2499588  T
Q  296 acgaatcactttctccatctctctttccgtcgccgaatcgtcggatctctccgttaaaggtga 358  Q
    |||||||| ||| ||||||||||||||||||||||||||| || ||||||| |||||||||||    
T  2499589 acgaatcaatttatccatctctctttccgtcgccgaatcgccgaatctctcagttaaaggtga 2499651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 2503989 - 2503876
Alignment:
Q  241 agctctctctccataccgtgattagctctctcgatctccttcctccttcctctgcacgaatcactttctccatctctctttccgtcgccgaatcgtcgga 340  Q
    ||||||||||||| ||  || |||||||||||||||||||||||||||| |||  | |||||| ||| ||||||||||||||||||||| ||||| || |    
T  2503989 agctctctctccaaactctggttagctctctcgatctccttcctccttcatctataggaatcaatttatccatctctctttccgtcgccaaatcgccgaa 2503890  T
Q  341 tctctccgttaaag 354  Q
    |||||| |||||||    
T  2503889 tctctctgttaaag 2503876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 116155 - 116014
Alignment:
Q  196 cgacggccaatagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccgtgattagctctctcgatctccttcctccttcctc 292  Q
    |||||||| |||||||||||||||||||||| |||||||||   ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  116155 cgacggccgatagctctctctccgtcatttggtccgacggcggcccgtagctctctctccatagcctgattagctctctcgatctccttcctccttcctc 116056  T
Q  293 tgcacgaatcactttctccatctctctttccgtcgccgaatc 334  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  116055 tgtacgaatcactttctccatctctctttccgtcgccgaatc 116014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 13558019 - 13557878
Alignment:
Q  196 cgacggccaatagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccgtgattagctctctcgatctccttcctccttcctc 292  Q
    |||||||  |||||||||||||||||||||| |||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  13558019 cgacggcagatagctctctctccgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatctccttcgcccttcctc 13557920  T
Q  293 tgcacgaatcactttctccatctctctttccgtcgccgaatc 334  Q
    || | |||||| ||||||| |||||||||| |||||||||||    
T  13557919 tgtatgaatcagtttctccttctctctttctgtcgccgaatc 13557878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 30607 - 30468
Alignment:
Q  205 atagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccgtgattagctctctcgatctccttcctcctt-------cctctg 294  Q
    |||||||||||||||||||||| |||||||||   |||||||||||||| |||||| ||||||||||||||||||||||||||||||       ||||||    
T  30607 atagctctctctccgtcatttggtccgacggcggcccgtagctctctctacataccctgattagctctctcgatctccttcctccttcctccttcctctg 30508  T
Q  295 cacgaatcactttctccatctctctttccgtcgccgaatc 334  Q
     |||||||| ||||||||||||||||||||||||||||||    
T  30507 tacgaatcagtttctccatctctctttccgtcgccgaatc 30468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 334
Target Start/End: Original strand, 22043048 - 22043181
Alignment:
Q  205 atagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccgtgattagctctctcgatctccttcctccttcctctgcacgaat 301  Q
    ||||||||||||  |||||||| |||||||||   ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||    
T  22043048 atagctctctctttgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatttccttcctccttcctctatacgaat 22043147  T
Q  302 cactttctccatctc-tctttccgtcgccgaatc 334  Q
    || |||||||||||| | ||||||||||||||||    
T  22043148 cagtttctccatctcttttttccgtcgccgaatc 22043181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 334
Target Start/End: Original strand, 44353427 - 44353560
Alignment:
Q  205 atagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccgtgattagctctctcgatctccttcctccttcctctgcacgaat 301  Q
    ||||||||||||  |||||||| |||||||||   ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||    
T  44353427 atagctctctctttgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatttccttcctccttcctctatacgaat 44353526  T
Q  302 cactttctccatctc-tctttccgtcgccgaatc 334  Q
    || |||||||||||| | ||||||||||||||||    
T  44353527 cagtttctccatctcttttttccgtcgccgaatc 44353560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University