View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_high_4 (Length: 340)
Name: NF7456_high_4
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 12125427 - 12125197
Alignment:
| Q |
16 |
atcagcaatatcctttttctgggctaacatgagaccttgataaattgcaaaaagtaccgcataaaggatgtttgttgaatcttggatgaaaccttaaaaa |
115 |
Q |
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| T |
12125427 |
atcagcaatatcctttttcttggctaacatgagaccttgataaattgcaaaaagtaccgcataaaggatgtttgttgaatcttggatgaaacctgaaaaa |
12125328 |
T |
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| Q |
116 |
tctatcagataatagcccgcataatttcgaaaagggtctccatagccagctcttgtattagaggcaagataacttccatcaacatttaggataacacttg |
215 |
Q |
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| T |
12125327 |
cctatcagataatagcccgcataatttcgaaaagggtctccatagccagctcttgtattagagataagataacttccatcaacatttaagataacatttg |
12125228 |
T |
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| Q |
216 |
tgttgcagaaaactcaacgaagaagacaccg |
246 |
Q |
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| T |
12125227 |
tgttgcagaaaactcaacgaaaaagacaccg |
12125197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Complemental strand, 12125174 - 12125145
Alignment:
| Q |
268 |
aaggatagaagacattgttgtaaatgtggt |
297 |
Q |
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| T |
12125174 |
aaggatagaagacattgttgtaaatgtggt |
12125145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 12644160 - 12644357
Alignment:
| Q |
16 |
atcagcaatatcctttttctgggctaacatgagaccttgataaattgcaaaaagtaccgcataaaggatgtttgttgaatcttggatgaaaccttaaaaa |
115 |
Q |
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|||||||||| |||||| || |||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
12644160 |
atcagcaatagccttttccttagctaacatgagaccctgataaatagcaaaaagttccgcataaaggatgtctgttgaatcttggatgaaacctgaaaat |
12644259 |
T |
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| Q |
116 |
tctatcagataatagcccgcataatttcgaaaagggtctccatagccagctcttgtattagaggcaagataacttccatcaacatttaggataacact |
213 |
Q |
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| T |
12644260 |
cctgtcagatagttgcctgcataatttcgaaaaaggccaccatagccagctctagtattggaggcaagacaacttccatcaacatttaggataacact |
12644357 |
T |
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