View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7456_low_10 (Length: 263)

Name: NF7456_low_10
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7456_low_10
NF7456_low_10
[»] scaffold0836 (2 HSPs)
scaffold0836 (13-248)||(919-1154)
scaffold0836 (13-243)||(4441-4671)
[»] scaffold0043 (1 HSPs)
scaffold0043 (28-248)||(70607-70827)
[»] scaffold1236 (1 HSPs)
scaffold1236 (29-248)||(1930-2149)
[»] chr3 (7 HSPs)
chr3 (14-248)||(18713880-18714114)
chr3 (36-248)||(27372655-27372867)
chr3 (15-248)||(27345971-27346201)
chr3 (142-241)||(27396136-27396235)
chr3 (100-244)||(18079871-18080012)
chr3 (142-241)||(18029446-18029545)
chr3 (179-244)||(27972994-27973059)


Alignment Details
Target: scaffold0836 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 919 - 1154
Alignment:
Q  13 tactagtgtaacttctgtcaaaggtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaa 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||   ||||| |||||||    
T  919 tactagtgtaacttctgtcaaaggtggcaacgttgtgcgatagtgtttggtacacatgctgatgaaacttttgagcttataaagcacgagacgttccaaa 1018  T
Q  113 gctggaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaa 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||    
T  1019 gctgaaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccactttctcacaataagcaa 1118  T
Q  213 ctttgagcacttttaattttgggaagacattgtttc 248  Q
      | ||||||||||||||||||||||||||||||||    
T  1119 tgtggagcacttttaattttgggaagacattgtttc 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 4441 - 4671
Alignment:
Q  13 tactagtgtaacttctgtcaaaggtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaa 112  Q
    ||||||| |||||||||||||||  ||||| ||||||| ||||||||||||||| |||| ||  ||||||  ||| | || ||||  ||| |||||||||    
T  4441 tactagtctaacttctgtcaaagccggcaatgttgtgcgatagtgtttggtacacatgccgactaaacttgggagatgatcaagatcgaggcattccaaa 4540  T
Q  113 gctggaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |  ||    
T  4541 gctggaagatgaaggtgggtcacctcattattgtggttttggtgatgattagtagcatcaatgtgcccaaatatgtattccaatttctcacaatgatcaa 4640  T
Q  213 ctttgagcacttttaattttgggaagacatt 243  Q
    | |||||| ||||||||||||||||||||||    
T  4641 cgttgagctcttttaattttgggaagacatt 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 70607 - 70827
Alignment:
Q  28 tgtcaaaggtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaagctggaagatgaagg 127  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||| ||| |||   |||| ||| |||||||||||||||||||    
T  70607 tgtcaaaggtggcaacgttgtgcaatagtgtttggtacacatgccgattaaactttggagtctatgaagcttgagatatttcaaagctggaagatgaagg 70706  T
Q  128 tgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaactttgagcactttta 227  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||   ||   |||| ||||||    
T  70707 tgggtcacctcattattgtggttttggtgatgatcagtagcatcaatgtgcccaaatatgtattccaatttctcacaagaaaagacgaggagctctttta 70806  T
Q  228 attttgggaagacattgtttc 248  Q
    |||||||||||||||||||||    
T  70807 attttgggaagacattgtttc 70827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1236 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold1236
Description:

Target: scaffold1236; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 2149 - 1930
Alignment:
Q  29 gtcaaaggtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaagctggaagatgaaggt 128  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||  ||| |||| ||| | ||||| |||||||| | ||||||||||||    
T  2149 gtcaatggtggcaacgttgtgcaatagtgtttggtacacatgccgattaaacttgggagattatcaagcctgagacgttccaaagatagaagatgaaggt 2050  T
Q  129 gggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaactttgagcacttttaa 228  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||  ||||||    
T  2049 gggtcacctcattattgtggtttttgtgatgatcagtagcatcaatgtgcccaaatatgtattccaatttctcacaatcatcaactttgagcttttttaa 1950  T
Q  229 ttttgggaagacattgtttc 248  Q
    ||||||||||||||||||||    
T  1949 ttttgggaagacattgtttc 1930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 18713880 - 18714114
Alignment:
Q  14 actagtgtaacttctgtcaaaggtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaag 113  Q
    |||||| ||| ||| ||||||| ||||||  |||||| ||||||||||||||| |||| ||| ||||||   ||  ||  |||    ||||||| |||||    
T  18713880 actagtttaagttcagtcaaagctggcaaaattgtgcgatagtgtttggtacacatgccgattaaacttcgaaggctacgaagtgcaagacatttcaaag 18713979  T
Q  114 ctggaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaac 213  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| |  |||    
T  18713980 ctggaagatgaagttggatcacctcattattgtggttgtggtgatgatcactagcatcaatgtgcccaaatatgtattccaatttctcacaatcatcaac 18714079  T
Q  214 tttgagcacttttaattttgggaagacattgtttc 248  Q
     | |||| |||||||||||||||||||||||||||    
T  18714080 gtcgagctcttttaattttgggaagacattgtttc 18714114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 248
Target Start/End: Complemental strand, 27372867 - 27372655
Alignment:
Q  36 gtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaagctggaagatgaaggtgggtcac 135  Q
    ||||||||||| |||| |||||||||||||| |||| ||  |||| |  |||| ||  |||   |||||||| ||||||||||||||||| |||||||||    
T  27372867 gtggcaacgttatgcagtagtgtttggtacacatgccgactaaacgtcggagtctacgaagcttgagacatttcaaagctggaagatgaaagtgggtcac 27372768  T
Q  136 ctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaactttgagcacttttaattttggg 235  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||   ||||| |||  ||||||||||||||    
T  27372767 ttcattattgtggttttggtgatgatcagtagcatcaatgtgcccaaatatgtatttcaatttcgtacaatattcaacttcgagatcttttaattttggg 27372668  T
Q  236 aagacattgtttc 248  Q
    |||||||||||||    
T  27372667 aagacattgtttc 27372655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 27346201 - 27345971
Alignment:
Q  15 ctagtgtaacttctgtcaaaggtggcaacgttgtgcaatagtgtttggtacaaatgctgatgaaacttttgagtttataaagacggagacattccaaagc 114  Q
    ||||| |||||| |||||||| ||||| |||||||| ||||||||||||||| |||| ||  ||||||  ||| |||  |||   ||||| ||||||||     
T  27346201 ctagtctaacttttgtcaaagctggcatcgttgtgcgatagtgtttggtacacatgccgactaaacttgggagattaagaagcacgagacgttccaaagg 27346102  T
Q  115 tggaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaact 214  Q
    | |||||||||||||||||||||||||||   |||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||   ||     
T  27346101 tagaagatgaaggtgggtcacctcattat---ggtttttgtgatgatcagtagcatcaatgtgcccaaatatgtataccaatttcgcacaagaaatgacg 27346005  T
Q  215 ttgagcacttttaattttgggaagacattgtttc 248  Q
      |||| |||||||||||||||||||||||||||    
T  27346004 aggagctcttttaattttgggaagacattgtttc 27345971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 27396136 - 27396235
Alignment:
Q  142 attgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaactttgagcacttttaattttgggaagaca 241  Q
    |||||||||||| |||| |||  || ||||||||||||||||||||||||| |||||| ||||||    ||||| ||||  ||| |||||||||||||||    
T  27396136 attgtggttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaatttttaacttcgagccttttcaattttgggaagaca 27396235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 18079871 - 18080012
Alignment:
Q  100 gagacattccaaagctggaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttc 199  Q
    |||||||||||||||||||| |||||   ||||||||||   |||||| ||||| |||| |||  |||| | |||||| |||| ||||||||||| |||     
T  18079871 gagacattccaaagctggaaaatgaatacgggtcacctc---attgtgattttgatgatcatcactagctttaatgtgtccaactatgtattccatttta 18079967  T
Q  200 tcacaataacgaactttgagcacttttaattttgggaagacattg 244  Q
    |||||||    ||| |||||| ||||||| ||||| |||||||||    
T  18079968 tcacaattttcaacgttgagctcttttaagtttggaaagacattg 18080012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 18029446 - 18029545
Alignment:
Q  142 attgtggttttggtgatgatctgtagcatcaatgtgcccaaatatgtattccaatttctcacaataacgaactttgagcacttttaattttgggaagaca 241  Q
    ||||| |||||| |||| |||  || ||||||||||||||||||||||||| |||||| ||||||    ||| | |||| ||||||||| ||||||||||    
T  18029446 attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca 18029545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 27973059 - 27972994
Alignment:
Q  179 ccaaatatgtattccaatttctcacaataacgaactttgagcacttttaattttgggaagacattg 244  Q
    |||||||| |||||||||| | | |||| || ||| | |||| |||||||||||||||||||||||    
T  27973059 ccaaatatctattccaattgcacgcaatcaccaacgtagagctcttttaattttgggaagacattg 27972994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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