View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_low_11 (Length: 252)
Name: NF7456_low_11
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_low_11 |
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| [»] chr7 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 21945031 - 21945268
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctcttttgatac |
114 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21945031 |
attagtgtgtggctgttcttttttcctatgaattaagattattgaactaaacaaaaacttaccaatatgacttcaaatcatgaatcttctcttttgatac |
21945130 |
T |
|
| Q |
115 |
atgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaagagtaaac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21945131 |
atgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatcttatgattgtagttaagagtaaac |
21945230 |
T |
|
| Q |
215 |
tttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |
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| T |
21945231 |
tttgtcttattttctcacactacaaatttggtcaatta |
21945268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 107 - 252
Target Start/End: Original strand, 23253341 - 23253486
Alignment:
| Q |
107 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23253341 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctctatcttatgattgtagttaa |
23253440 |
T |
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| Q |
207 |
gagtaaactttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
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|| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
23253441 |
gaataaactttgtcttattttctcacactacaaacttgatcaatta |
23253486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 23253092 - 23253178
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatct |
101 |
Q |
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|||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23253092 |
attagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttcaaatcatgaatct |
23253178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 19599110 - 19599342
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatgattaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctcttttgataca |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19599110 |
attagtatgtggctgttcttttt-cctatgattaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctcttttgataca |
19599208 |
T |
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| Q |
116 |
tgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaagagtaaact |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19599209 |
tgtttgaatga---tgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatcttatgattgtagtcaagagtaaact |
19599305 |
T |
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| Q |
216 |
ttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
19599306 |
ttgtcttattttctcacactacaaacttggtcaatta |
19599342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 13951851 - 13951946
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga--ttaagattattgaactaaacaaa-aacataccaatatgacttcaaatcatgaatcttctctttt |
109 |
Q |
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|||||||||||||||||||||||| |||| | | |||| |||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||| |
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| T |
13951851 |
attagtatgtggctgttcttttttgctataaattaaagactattgaactaaacaaagaacataccaat-tgacttcagatcatgaagcttctctttt |
13951946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 53534466 - 53534321
Alignment:
| Q |
107 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53534466 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctctatcttatgattgtagttaa |
53534367 |
T |
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| Q |
207 |
gagtaaactttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
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|| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
53534366 |
gaataaactttgtcttattttctcacactacaaacttgatcaatta |
53534321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 53534715 - 53534629
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatct |
101 |
Q |
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|||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53534715 |
attagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttcaaatcatgaatct |
53534629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 107 - 252
Target Start/End: Original strand, 4753996 - 4754141
Alignment:
| Q |
107 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaa |
206 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4753996 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctctatcttatgattgtagttaa |
4754095 |
T |
|
| Q |
207 |
gagtaaactttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
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|
|| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
4754096 |
gaataaactttgtcttattttctcacactacaaacttgatcaatta |
4754141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 4753748 - 4753834
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatct |
101 |
Q |
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|||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
4753748 |
attagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttaaaatcatgaatct |
4753834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 38202276 - 38202186
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctctttt |
109 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38202276 |
attagtatgtagctgtttttttttcctataaattaagattattgaactaaacaaaaacataccaatatgacttca----atgaatcttctctttt |
38202186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 252
Target Start/End: Original strand, 42916457 - 42916602
Alignment:
| Q |
107 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
42916457 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctttatcttatgattgtagttaa |
42916556 |
T |
|
| Q |
207 |
gagtaaactttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
42916557 |
gaataaactttgtcttattttctcacactacaaacttgatcaatta |
42916602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 42916208 - 42916294
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatct |
101 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42916208 |
attagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttcaaatcatgaatct |
42916294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 13095830 - 13095685
Alignment:
| Q |
107 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactagacacccgtttatttcttcttcacgcctctatcttatgattgtagttaa |
206 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
13095830 |
tttgatacatgtttgagtgaagatatccaagagtatattggtaagtaactaaacacctgtttattgcttcttcacgcctctatcttatgattgtagttag |
13095731 |
T |
|
| Q |
207 |
gagtaaactttgtcttattttctcaccctacaaacttggtcaatta |
252 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13095730 |
gagtaaactttgtcttattttctcaaactacaaacttggtcaatta |
13095685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 17382218 - 17382124
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctctttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17382218 |
attagtatgtggctgttcttttttcctataaattaagattattgaactaaacaaaaacataccaatatgatttcaaatcatgaatcttctctttt |
17382124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 13096107 - 13096012
Alignment:
| Q |
16 |
attagtatgtggctgttcttttttc--ctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctctttt |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13096107 |
attagtatgtggctgttctttttttttctataaattaagattattgaacaaaacaaaa-cataccaatatgacttcaaatcatgaatcttctctttt |
13096012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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