View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_low_14 (Length: 238)
Name: NF7456_low_14
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 935601 - 935823
Alignment:
| Q |
1 |
tgaagaatcgttcttttaactctcatcatcatacatccatgacatttctaatgaataaatcgattcggaaaatgtgttagctaaatttgtgatccaagaa |
100 |
Q |
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| T |
935601 |
tgaagaatcgttcttttaactctcatcatcatacatccatgacatttctaatgaataaatcgattcagaaaatgtgttggctaaatttgtgatccaagaa |
935700 |
T |
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| Q |
101 |
tgaatcaaattattacatctttcccaagcctgacaacttggatctgtcaaagctggtactcctattgttctgtcaaagctggttctttccatatcgcacg |
200 |
Q |
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| T |
935701 |
tgaatcaaattattacatctttcccaagcttgacaacttggatctgtcaaagctggtactcctattgttctgtcaaagctggttctttccatatcgcacg |
935800 |
T |
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| Q |
201 |
agtccatgctagatagttcaatc |
223 |
Q |
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|||||| |||||||||||||||| |
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| T |
935801 |
agtccaagctagatagttcaatc |
935823 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 4261260 - 4261208
Alignment:
| Q |
92 |
atccaagaatgaatcaaattattacatctttcccaagcctgacaacttggatc |
144 |
Q |
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||||||||||||||||| |||||||||| ||||||||||| || | ||||||| |
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| T |
4261260 |
atccaagaatgaatcaagttattacatcgttcccaagcctaacgatttggatc |
4261208 |
T |
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