View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_low_16 (Length: 206)
Name: NF7456_low_16
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4286450 - 4286614
Alignment:
| Q |
1 |
accaccaagttattatattgaagattgaaccaaggacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttca |
100 |
Q |
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| T |
4286450 |
accaccaagttattatattgaagattgaaccaaagacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttca |
4286549 |
T |
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| Q |
101 |
tgcattgctatataaaaggtctcaaaacataaaactggtttaataaacagcaacatttatttatg |
165 |
Q |
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| T |
4286550 |
tgcattgctatataaaaggtctcaaaacataaaactggtttaataaacagcaacatttatttatg |
4286614 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 17165434 - 17165498
Alignment:
| Q |
40 |
aagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgca |
104 |
Q |
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| T |
17165434 |
aagattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgca |
17165498 |
T |
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