View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_low_2 (Length: 415)
Name: NF7456_low_2
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 29286480 - 29286080
Alignment:
| Q |
7 |
caaaggacacagaaaaacaatttgttgaggttatttatttgtcagcttgccttgaagtaggctctataatataaaatttcttcagaatcatattcatttt |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29286480 |
caaagtacacagaaaaacaatttgttgaggttatttatttgtcagcttgccttgaagtatgctctataatataaaatttcttcagaatcatattcatttt |
29286381 |
T |
|
| Q |
107 |
ccgtctatgttgatatgattgttgctcagcgtagagagaataagtatagacgtctagctcaagggttatgtcaa-gccattggcaagtggaaattagttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29286380 |
ccgtctatgttgatatgattgttgctcagcgtagagagaataagtatagacgtctagctcaagggttatgtcaaagccattggcaagtggaaattagttg |
29286281 |
T |
|
| Q |
206 |
gctgcactaatttccaatttgtgtcgcatgtttctctacttctgggtcatccaataacacacaatttctgatatcattagagttaattgtaaataattgc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29286280 |
gctgcactaatttccaatttgtgtcgcatgtttctctacttctgggtcatccaataacacacaatttctgatatcattagagttaattgtaaacaattgc |
29286181 |
T |
|
| Q |
306 |
tcattattttggagaatcaactatgactccacaactttgtatatgtaccttttctgtataacaagaaaggcacggccaatatttctaacatggtatcgga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29286180 |
tcattattttggagaatcaactatgactccacaactttgtatatataccttttctgtataacaagaaaggcacggccaatatttctaacatggtattgga |
29286081 |
T |
|
| Q |
406 |
g |
406 |
Q |
| |
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| T |
29286080 |
g |
29286080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 35234926 - 35234825
Alignment:
| Q |
7 |
caaaggacacagaaaaacaatttgttgaggttatttatttgtcagcttgccttgaagtaggctctataatataaaatttcttcagaatcatattcatttt |
106 |
Q |
| |
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||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35234926 |
caaagtacgcagcaaaacaatttgttgaggttatttatttgtcagcttgccttgaagtaggctctataatataaaatttcttcagaatcatattcatttt |
35234827 |
T |
|
| Q |
107 |
cc |
108 |
Q |
| |
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|| |
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| T |
35234826 |
cc |
35234825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 266 - 406
Target Start/End: Complemental strand, 35234394 - 35234261
Alignment:
| Q |
266 |
acaatttctgatatcattagagttaattgtaaataattgctcattattttggagaatcaactatgactccacaactttgtatatgta-ccttttctgtat |
364 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| |
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| T |
35234394 |
acaaattctgatatcattagagtttattgtaaataattgctcattattttggagagtcaactatgactccacaactttgtatatatacccttttctgtat |
35234295 |
T |
|
| Q |
365 |
aacaagaaaggcacggccaatatttctaacatggtatcggag |
406 |
Q |
| |
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||| || ||||||||||||||||||||||||||||| |
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| T |
35234294 |
aac------gg--cggccaatatttctaacatggtatcggag |
35234261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 35234593 - 35234454
Alignment:
| Q |
103 |
ttttccgtctatgttgatatgattgttgctcagcgtagagagaataagtatagacgtctagctc-----aagggttatgtcaagccattggcaagtggaa |
197 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||| | |||| |||||| ||||| |
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| T |
35234593 |
ttttccatctatgttgatatgattgttgctcagcgaagagagaataagtatatacgtctagctcaaactaaaggttatgcaatgccactggcaaatggaa |
35234494 |
T |
|
| Q |
198 |
attagttggctgcactaatttccaatttgtgtcgcatgtt |
237 |
Q |
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||| |||||||||||||||||||||||||||| ||||||| |
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| T |
35234493 |
attggttggctgcactaatttccaatttgtgtagcatgtt |
35234454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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