View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_low_3 (Length: 390)
Name: NF7456_low_3
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 40726649 - 40727012
Alignment:
| Q |
18 |
tatttttggtcataaatagagttgaaccggtcatgatcaatcaagttaagaccaaggaggcaaggacaaattttataagcattgttgataggataatggc |
117 |
Q |
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| T |
40726649 |
tatttttggtcataaatagagttgaaccggtcatgatcaatcaagttaagaccaaggaggcaaggacaaattttataagcattgttgataggataatggc |
40726748 |
T |
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| Q |
118 |
atattcgaagtttccatgaacccgacgatgtctccgaaaaagcgaagacttcagttttggcatggagttattggaagagaaagaaagaccaaggattcaa |
217 |
Q |
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| T |
40726749 |
atattcgaagtttccatgaacccgacgatgtctccgaaaaagcgaagacttcagttttggcatggaattattggaagagaaagaaagaccaaggattcaa |
40726848 |
T |
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| Q |
218 |
gacaagtttcacataaggtcaacaannnnnnngttacgacataaggccaagaatgaatcaacatctcaactaaattattaaataacgtcctctttaaatc |
317 |
Q |
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| T |
40726849 |
gacaagtttcacataaggtcaacaatttttttgttacaacataaggccaagaatgaatcaacatctcaactaaattattaaataacgtcctctttaaatc |
40726948 |
T |
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| Q |
318 |
catcatgcttctaaccatttttcttcttaataaatcctcttttgttcccttcccatgaacacca |
381 |
Q |
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| T |
40726949 |
tatcatgcttctaaccatttttcttcttaataaatcctcttttgttcccttcccatgatcacca |
40727012 |
T |
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