View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7456_low_8 (Length: 339)
Name: NF7456_low_8
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7456_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 124 - 339
Target Start/End: Original strand, 16084952 - 16085167
Alignment:
| Q |
124 |
tgttggttagttttaatttatggtaccaaaatgttggtgattttgcctattgtttactgtcaaaagcattgttttaaattcgaaggtgtgtccggtgtca |
223 |
Q |
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| T |
16084952 |
tgttagttagttttaatttatggtaccaaaatgttggtgattttgcctattgtttagtgtcaaaagcattgtgttaaattcgaaggtgtgtccggtgtca |
16085051 |
T |
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| Q |
224 |
cacacgtcttagggtccgacacccacacatctgattaaattcggttaacttattttctaaaattattggcggcatccgcgttcagtggtgttgattccat |
323 |
Q |
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| T |
16085052 |
cacacgtcttagtgtccgacacccacacatctgattaaattcggttaacttattttctaaaattattggtggcatccgcgttcagtggtgttgagtccat |
16085151 |
T |
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| Q |
324 |
ttctgtaaccgtgctt |
339 |
Q |
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| T |
16085152 |
ttctgtaaccgtgctt |
16085167 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 16084880 - 16084961
Alignment:
| Q |
23 |
aaatcgctgcctccttagagaaacacaagaatcaagtgagttccttaattatttatttattgcttcatttactgttagttag |
104 |
Q |
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| T |
16084880 |
aaatcgctgatttcttagagaaacacaagaatcaagtgagttctttcattatttatttattgcttcatttactgttagttag |
16084961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 46628614 - 46628548
Alignment:
| Q |
28 |
gctgcctccttagagaaacacaagaatcaagtgagttccttaattatttatttattgcttcatttact |
95 |
Q |
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| T |
46628614 |
gctgcttccttggagaaacagaagaatcaagtgagttctttaatta-atattttttgcttcatttact |
46628548 |
T |
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