View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7456_low_9 (Length: 304)

Name: NF7456_low_9
Description: NF7456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7456_low_9
NF7456_low_9
[»] chr8 (1 HSPs)
chr8 (234-296)||(42919074-42919136)
[»] chr7 (1 HSPs)
chr7 (242-296)||(21945402-21945456)
[»] chr5 (2 HSPs)
chr5 (242-296)||(19599476-19599530)
chr5 (234-296)||(13952169-13952231)
[»] chr3 (3 HSPs)
chr3 (242-296)||(53536879-53536933)
chr3 (244-296)||(53533356-53533408)
chr3 (234-270)||(3348986-3349022)
[»] chr1 (3 HSPs)
chr1 (235-296)||(38201886-38201947)
chr1 (242-296)||(4756605-4756659)
chr1 (234-270)||(26060703-26060739)
[»] chr4 (2 HSPs)
chr4 (233-296)||(17381823-17381886)
chr4 (242-296)||(13095438-13095492)
[»] chr6 (1 HSPs)
chr6 (233-270)||(2452063-2452100)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 42919136 - 42919074
Alignment:
Q  234 tttgtcataaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42919136 tttgtcctaaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 42919074  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 21945456 - 21945402
Alignment:
Q  242 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21945456 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttcttcctaatt 21945402  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 19599530 - 19599476
Alignment:
Q  242 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19599530 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttcttcctaatt 19599476  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 13952231 - 13952169
Alignment:
Q  234 tttgtcataaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  13952231 tttgtcacaaattataagccgttttgcaatatcaatataaaattattcatgttcttcctaatt 13952169  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 53536933 - 53536879
Alignment:
Q  242 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53536933 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttcttcctaatt 53536879  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 53533408 - 53533356
Alignment:
Q  244 attataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  53533408 attataagtcgttttgcaatatcaatgtaaaattgttcatgttcttcctaatt 53533356  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 3349022 - 3348986
Alignment:
Q  234 tttgtcataaattataagtcgttttgcaatatcaatg 270  Q
    |||||| |||||||||||||||||| |||||||||||    
T  3349022 tttgtcctaaattataagtcgttttacaatatcaatg 3348986  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 38201886 - 38201947
Alignment:
Q  235 ttgtcataaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  38201886 ttgtcctaaattataagttgttttgcaatatcaatgtaaaattattcatgttcttcctaatt 38201947  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 4756659 - 4756605
Alignment:
Q  242 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  4756659 aaattataagtcgttttgcaatatcaatgtaaaatttttcatgttcttcctaatt 4756605  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 26060739 - 26060703
Alignment:
Q  234 tttgtcataaattataagtcgttttgcaatatcaatg 270  Q
    |||||| |||||||||||||||||| |||||||||||    
T  26060739 tttgtcttaaattataagtcgttttacaatatcaatg 26060703  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 17381823 - 17381886
Alignment:
Q  233 ttttgtcataaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||  |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||    
T  17381823 ttttgtcccaaattataagtcgttttgtaatatcaatgaaaaattattcatgttcttcctaatt 17381886  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 13095438 - 13095492
Alignment:
Q  242 aaattataagtcgttttgcaatatcaatgtaaaattattcatgttctttctaatt 296  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||    
T  13095438 aaattataagtcattttgcaatatcgatgtaaaattattcatattcttcctaatt 13095492  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 2452100 - 2452063
Alignment:
Q  233 ttttgtcataaattataagtcgttttgcaatatcaatg 270  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  2452100 ttttatcataaattataagtcgttttacaatatcaatg 2452063  T

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