View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7457_high_1 (Length: 874)
Name: NF7457_high_1
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_high_1 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 854
Target Start/End: Complemental strand, 20597454 - 20596600
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597454 |
ccatcaggtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccag |
20597355 |
T |
|
| Q |
101 |
agtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20597354 |
agtgtcacatttttgatcaccagtgaatttgtgtttgctccaatgcttggcatgaatgtttttgagatactcatatgctccttcccttatatccttgatc |
20597255 |
T |
|
| Q |
201 |
tctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagtta |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20597254 |
tctttcatggcatcaatgaatgcattttcataagttgcttttgctgccctccacatcaactcctttaactttttcccaggatgttttttc-ctaaagtta |
20597156 |
T |
|
| Q |
301 |
ttgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgtaattgtgattgttaaataaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597155 |
ttgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagtcggcaaaagaccctgcaatgtaattgtgattgttaaataaa |
20597056 |
T |
|
| Q |
401 |
cagnnnnnnn--gtctaacatttaaaaagacaataatgaagtaaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccac |
498 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20597055 |
caggaaaaaaaagtctaacaagtaaaaagacaataatgaagtaaaactaccttttgttggtcactaataaaagtgtaagtcttacatagtcttggtccac |
20596956 |
T |
|
| Q |
499 |
ctaaatcagcaattagaagctccaagaaccacttctaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatc |
598 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20596955 |
ctaaatcagcaattagtagctccaagaaccaattccaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatc |
20596856 |
T |
|
| Q |
599 |
ccttccaatagcagcgagcaacttcccaccatagtaacccttcaggaaacaaccatcaagcccaataacactcctacagttnnnnnnnctatccttgcac |
698 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20596855 |
ccttccaatagcagcgagcaacatcccaccatagtaacccttcaggaaacaaccatcaagcccaataacactcctacagttaaaaaaactatccttgcac |
20596756 |
T |
|
| Q |
699 |
cctttgaaacaaatatacagtctttcaaaatgtggacagaaaactgctccaggtgcctcaaggtctgcttcattgccttggaatggtttattggtaacac |
798 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20596755 |
cctttgaaacaaatatatagtctttcaaaatgtggacagaaaactgctccaagtgcctcaaggtctgcttcattgccttggaatggtttattggtaacac |
20596656 |
T |
|
| Q |
799 |
aaacagttgactttttgtttgatcttaataaatcatgggcataatcatatattctg |
854 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20596655 |
aaacagttgactctttgtttgatcttaataactcatgggcataatcatatattctg |
20596600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 446 - 676
Target Start/End: Original strand, 3814478 - 3814708
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| || | ||| ||||||||||| ||| |||| | || ||||| ||||||||| | |||||||| |
|
|
| T |
3814478 |
taccttttgttgatcactaatgaaggtgtaagtcttgcataatctgggtccacctaagtcaccaatcaagagttccaaaaaccacttccatgattccttt |
3814577 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcagga |
645 |
Q |
| |
|
|| || ||||| |||||| || | ||||||||||||||||| ||||| || ||||||||||| ||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
3814578 |
gtttcaccttcaaccacaacaaatgctattggaagcatctggtcatttgggtcccttccaattgcagctagcaactgcccaccatagtaacccttcaaga |
3814677 |
T |
|
| Q |
646 |
aacaaccatcaagcccaataacactcctaca |
676 |
Q |
| |
|
| || ||||| | |||||||| ||||||||| |
|
|
| T |
3814678 |
agcacccatctaacccaataatactcctaca |
3814708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 3814207 - 3814305
Alignment:
| Q |
183 |
tcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccagga |
281 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||||||| ||||| |||| |||||||||||||||||| || ||||| ||||| || |||||| |
|
|
| T |
3814207 |
tcactaatctccttgatctctttcattacatcaaggaatgcattctcataagttgattttgctgccctccacattaattccttcaacttctttccagga |
3814305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 668; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 854
Target Start/End: Complemental strand, 8698454 - 8697601
Alignment:
| Q |
1 |
ccatcaagtacactctgatg-tcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcacca |
99 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8698454 |
ccatcaggtacactctgatggtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcacca |
8698355 |
T |
|
| Q |
100 |
aagtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgat |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8698354 |
gagtgtcacattttggatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgat |
8698255 |
T |
|
| Q |
200 |
ctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagtt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8698254 |
atctttcatggcatcattgaatgcattttcatatgttgcttttgctgccctccacatcaactcctttaactttttcccaggatgttttttc-ctaaagtt |
8698156 |
T |
|
| Q |
300 |
attgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgtaattgtgattgttaaataa |
399 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8698155 |
attgtacagatgccttacacaaaacctttgatcaacatcaggcagtaactcatccatagctggcaaaagaccctgcaatgtaattgtgattgttaattaa |
8698056 |
T |
|
| Q |
400 |
acagnnnnnnngtctaacatttaaaaagacaataatgaagtaaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacc |
499 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8698055 |
acagaaaaaaagtctaacatgtaaaaagacaataatgaagtaaaactaccttttgctggtcactaataaaagtgtaagtcttacacaatcttggtccacc |
8697956 |
T |
|
| Q |
500 |
taaatcagcaattagaagctccaagaaccacttctaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcc |
599 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8697955 |
taaatcaccaattagaagctccaagaaccacttccaagattctttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcc |
8697856 |
T |
|
| Q |
600 |
cttccaatagcagcgagcaacttcccaccatagtaacccttcaggaaacaaccatcaagcccaataacactcctacagttnnnnnnnctatccttgcacc |
699 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
8697855 |
cttccaatagcagcaagcaacatcccaccatagtaacccttcaggaaacaaccatcaagcccgataacactcctacagttaaaaaaactatctttgcacc |
8697756 |
T |
|
| Q |
700 |
ctttgaaacaaatatacagtctttcaaaatgtggacagaaaactgctccaggtgcctcaaggtctgcttcattgccttggaatggtttattggtaacaca |
799 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8697755 |
ctttcaaacaaatatatagtctttcaaaatgtggacagaaaactgctccaattgcctcaaggtctgcttcattgccttggaatggtttagtggtaacaca |
8697656 |
T |
|
| Q |
800 |
aacagttgactttttgtttgatcttaataaatcatgggcataatcatatattctg |
854 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8697655 |
aacagttgactctttgtttgatcttaataactcatgggcataatcatatattctg |
8697601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 446 - 612
Target Start/End: Complemental strand, 11385888 - 11385722
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| || || ||||||| ||||| ||||||||||| |||| ||||| |||||| || | ||||| ||| |
|
|
| T |
11385888 |
taccttttgctggtcactaattatagtgtaagtattgcaaagtcttgtgccacccaaatcagcaatgagaatctccagaaaccacatccatgattctttg |
11385789 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
612 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| || || |||||||||||| ||||||| |||| |
|
|
| T |
11385788 |
ttctctccttccacaacagcatatgcaattggaagtatttggtcattaggatccattccaattgcag |
11385722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19836137 - 19836044
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttatt |
94 |
Q |
| |
|
|||||| ||| | |||||||||||||||||| || || | |||||| ||||||| |||| ||| ||||||||||| | ||||||||||||||| |
|
|
| T |
19836137 |
ccatcatgtaaattctgatgtcctcacacatagtgacaattggctttcctctagggatgacaattgttgagttaaaagcctctgacatgttatt |
19836044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 664
Target Start/End: Complemental strand, 26449339 - 26449191
Alignment:
| Q |
516 |
agctccaagaaccacttctaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcga |
615 |
Q |
| |
|
||||| |||||||| ||| | || || || ||||||||||| || ||| | | || |||||||| || || ||||| |||||| | ||||| ||||| | |
|
|
| T |
26449339 |
agctctaagaaccatttccaggactctttagtctctccttcaacaacaacccatgcaattggaagtatttggtcatttggatccataccaatggcagcca |
26449240 |
T |
|
| Q |
616 |
gcaacttcccaccatagtaacccttcaggaaacaaccatcaagcccaat |
664 |
Q |
| |
|
||||| | |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
26449239 |
gcaacattccaccataaggtcccttaaggaaacaaccatcaagcccaat |
26449191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 655
Target Start/End: Original strand, 20484601 - 20484698
Alignment:
| Q |
558 |
accacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcaggaaacaaccatc |
655 |
Q |
| |
|
|||||| ||||||| || || | |||||| ||||| || ||||| ||||| |||| |||||||| || ||||| ||||| |||| |||||||||||| |
|
|
| T |
20484601 |
accacaacataagcaataggcaacatctggtcatttgggtccctcccaattgcagtgagcaactgtcccccataataacctttcaagaaacaaccatc |
20484698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 5e-46; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 446 - 769
Target Start/End: Complemental strand, 23331378 - 23331055
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||| ||| | ||||||||||||||||| || |||||||| ||||| ||| | ||||| || |
|
|
| T |
23331378 |
taccttttgttgatcacttataaaagtgtaagtcaagcacaatctatgaccacctaaatcagcaataagtagctccaaaaaccatttccatgattctttt |
23331279 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcagga |
645 |
Q |
| |
|
|| || ||||| ||||||||| | |||||||||||||| |||||||| || ||||||||||| ||||| | | || |||||||| |||||||| | | |
|
|
| T |
23331278 |
gtttccccttcaaccacagcaaatgctattggaagcatttgatcattggggtcccttccaattgcagccaagagctgtccaccataataaccctttaaaa |
23331179 |
T |
|
| Q |
646 |
aacaaccatcaagcccaataacactcctacagttnnnnnnnctatccttgcaccctttgaaacaaatatacagtctttcaaaatgtggacagaaaactgc |
745 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| || || |||||||| ||||||||||||| ||||| ||| | |||||| ||||| || || || |
|
|
| T |
23331178 |
aacaaccatcaagtccaattatactcctacacttgaaaaagctctccttgcatcctttgaaacaaacatacattctctgaaaatggggacacaagacagc |
23331079 |
T |
|
| Q |
746 |
tccaggtgcctcaaggtctgcttc |
769 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
23331078 |
accaggtgcctcaaggtcttcttc |
23331055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 441 - 751
Target Start/End: Complemental strand, 24506066 - 24505756
Alignment:
| Q |
441 |
aaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagatt |
540 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||| |||| || ||||||||| |||||||| ||||||||||| ||||||||| | || | |
|
|
| T |
24506066 |
aaaattaccttttgttgatcactaataaaggtgtatgtcttgcacaacctgcttccacctaagtcagcaatcagaagctccaaaaaccacttccacgact |
24505967 |
T |
|
| Q |
541 |
ccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaaccctt |
640 |
Q |
| |
|
|||| || || ||||| |||| | || | || ||||||||||| |||||||| |||||||| ||||| ||||| ||||| | ||||||||| || || || |
|
|
| T |
24505966 |
cctttgtttcaccttctaccaaaacaaatgcaattggaagcatttgatcatttggatccctcccaattgcagctagcaattgcccaccataatatccttt |
24505867 |
T |
|
| Q |
641 |
caggaaacaaccatcaagcccaataacactcctacagttnnnnnnnctatccttgcaccctttgaaacaaatatacagtctttcaaaatgtggacagaaa |
740 |
Q |
| |
|
|| ||| || ||||| || ||||| ||| |||||| || ||||| ||||| |||||||||||||||||| || | |||||| ||||| || |
|
|
| T |
24505866 |
caagaagcatccatccagtccaatcacaggcctacacttgaaaaaactatctttgcaagctttgaaacaaatatacatcctctgaaaatgaggacataac |
24505767 |
T |
|
| Q |
741 |
actgctccagg |
751 |
Q |
| |
|
||||||||||| |
|
|
| T |
24505766 |
actgctccagg |
24505756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 446 - 612
Target Start/End: Original strand, 21793446 - 21793612
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| || || ||||||| ||||| ||||||||||| |||||||||| |||||| || | ||||| ||| |
|
|
| T |
21793446 |
taccttttgctggtcactaattatagtgtaagtattgcaaagtcttgtgccacccaaatcagcaatgagaagctccagaaaccacatccatgattctttg |
21793545 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
612 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| || || |||||||||||| ||||||| |||| |
|
|
| T |
21793546 |
ttctctccttccacaacagcatatgcaattggaagtatttggtcattaggatccattccaattgcag |
21793612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 23331830 - 23331451
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
|||||||||| ||||| || |||||| |||| ||||||||||| || || |||||||| | ||| || || || || | ||| ||||||||||||||| |
|
|
| T |
23331830 |
ccatcaagtatactctaatttcctcaaacattgtcaccactggttttcccctagctataacaatggtagaattgaaggcttctaacatgttattcaccag |
23331731 |
T |
|
| Q |
101 |
agtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatc |
200 |
Q |
| |
|
|||||||||| | ||| |||||| || ||||||||||| | ||||| || || | ||||| ||||| |||||||||||||| | || ||| |
|
|
| T |
23331730 |
agtgtcacatagtggtccactagtgaacttagacttgctccaatgtcttgcagggattttcataagatattcataagctccttcacttatctgttttatc |
23331631 |
T |
|
| Q |
201 |
tctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagtta |
300 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||| | || ||||||||| |||||||||| ||||| ||||| || ||||||| |||||||| |
|
|
| T |
23331630 |
tctgccattgcatcattgaatgcattatcataactggcctttgctgccttccacatcaattccttcaacttctttccaggat-atttcttcctaaagttg |
23331532 |
T |
|
| Q |
301 |
ttgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgta |
381 |
Q |
| |
|
||||| |||||||| ||||| || ||||| ||||| |||| |||| ||||||||||| || ||||| |||| ||||||| |
|
|
| T |
23331531 |
ttgtaaagatgcctcacacagaatctttggtcaactccaggaagtagttcatccatagctggtaaaagtccctacaatgta |
23331451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 664
Target Start/End: Original strand, 21009112 - 21009263
Alignment:
| Q |
513 |
agaagctccaagaaccacttctaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
612 |
Q |
| |
|
||||||||||||||||| ||| | || || |||||||||||||| || || ||| | || |||||||| || || ||||| |||||| ||||||| || | |
|
|
| T |
21009112 |
agaagctccaagaaccatttccaggactctttggtctctccttcaacaactgcaaatgcaattggaagtatttggtcatttggatccattccaattgccg |
21009211 |
T |
|
| Q |
613 |
cgagcaacttcccaccatagtaacccttcaggaaacaaccatcaagcccaat |
664 |
Q |
| |
|
| | |||| | |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21009212 |
ccaacaacattccaccataaggccccttaaggaaacaaccatcaagcccaat |
21009263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 24506376 - 24506258
Alignment:
| Q |
138 |
ctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttg |
237 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||| || || ||| ||||| ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
24506376 |
ctccaatgcttagcaggaatcaatttgaggtaatcatatgcaggttgacatatgtcctttatctctttcattgcatcatcaaatgcattttcataagtta |
24506277 |
T |
|
| Q |
238 |
cttttgctgccctccacat |
256 |
Q |
| |
|
| || |||||| ||||||| |
|
|
| T |
24506276 |
ccttagctgccttccacat |
24506258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 7e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 446 - 769
Target Start/End: Complemental strand, 20622995 - 20622672
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||| ||| || ||||||| ||||||||| || || ||||| ||||| || | ||||| || |
|
|
| T |
20622995 |
taccttttgttgatcacttataaaagtgtaagtcaagcacaatctaggaccacctagatcagcaatgagtagttccaaaaaccattttcatgattctttt |
20622896 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcagga |
645 |
Q |
| |
|
|| || ||||| ||||||||| | |||||||||||||| |||||||| || ||||||||||| ||||| | | || ||||||||||||||||| | | |
|
|
| T |
20622895 |
gtttccccttcaaccacagcaaatgctattggaagcatttgatcattggggtcccttccaattgcagccaagagctgtccaccatagtaaccctttaaaa |
20622796 |
T |
|
| Q |
646 |
aacaaccatcaagcccaataacactcctacagttnnnnnnnctatccttgcaccctttgaaacaaatatacagtctttcaaaatgtggacagaaaactgc |
745 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| || || || ||||| ||||||||||| | ||||| ||| | |||||| ||||| || || || |
|
|
| T |
20622795 |
aacaaccatcaagtccaattatactcctacacttgaaaaagctctctttgcatcctttgaaacatacatacattctctgaaaatggggacacaagacagc |
20622696 |
T |
|
| Q |
746 |
tccaggtgcctcaaggtctgcttc |
769 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
20622695 |
accaggtgcctcaaggtcttcttc |
20622672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 20623447 - 20623068
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
|||||||||| ||||| || |||||| |||| ||||||||||| || || |||||||| | ||| || || || || | ||||||||||||||||||| |
|
|
| T |
20623447 |
ccatcaagtatactctaatttcctcaaacattgtcaccactggttttcccctagctataacaatggtagaattgaaggcttctgacatgttattcaccag |
20623348 |
T |
|
| Q |
101 |
agtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatc |
200 |
Q |
| |
|
|||||||||| | ||| |||||| || ||||||||||| | ||||| || || | ||||| ||||| |||||||||||||| || || ||| |
|
|
| T |
20623347 |
agtgtcacatagtggtccactagtgaacttagacttgctccaatgtcttgcagggattttcataagatattcataagctccttcacttatctcttttatc |
20623248 |
T |
|
| Q |
201 |
tctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagtta |
300 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||| | |||||||||||| |||||||||| ||||| ||||| || ||||||| |||||||| |
|
|
| T |
20623247 |
tctgccattgcatcattgaatgcattatcataactggcttttgctgccttccacatcaattccttcaacttctttccaggat-atttcttcctaaagttg |
20623149 |
T |
|
| Q |
301 |
ttgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgta |
381 |
Q |
| |
|
||||| |||||||| ||||| || ||||| ||||| |||| |||| ||||||||||| || ||||| |||| ||||||| |
|
|
| T |
20623148 |
ttgtaaagatgcctcacacataatctttggtcaactccaggaagtagttcatccatagctggtaaaagtccctacaatgta |
20623068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 612
Target Start/End: Original strand, 37102307 - 37102473
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||| || ||||||| ||||| ||| |||||| || |
|
|
| T |
37102307 |
taccttttgttggtcactaataaaagtgtaagtcaagcacaatccaggtccacctaagtcagcaatgagctgctccaaaaaccatttccaagattttttt |
37102406 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
612 |
Q |
| |
|
||||| ||||| |||| || | |||||||||||| |||| ||| || ||||||| |||||||| |
|
|
| T |
37102407 |
gtctccccttcaaccaatacaattgatattggaagcatttgataatttgggtcccttcaaatagcag |
37102473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 446 - 751
Target Start/End: Original strand, 23705951 - 23706256
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| || | ||| | ||||||||| ||| |||| || || ||||| ||||||||| | |||||||| |
|
|
| T |
23705951 |
taccttttgttgatcactaataaatgtgtaagtcttgcataatctagttccacctaagtcaccaatcaggagttccaaaaaccacttccatgattccttt |
23706050 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcagga |
645 |
Q |
| |
|
|| || ||||| |||||| || | ||||| |||| |||||| |||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| | |
|
|
| T |
23706051 |
gtttcaccttcaaccacaacaaatgctataggaatcatctggtcattagggtcccttccaattgcagcaagcaactgtccaccatagtaacccttcaaaa |
23706150 |
T |
|
| Q |
646 |
aacaaccatcaagcccaataacactcctacagttnnnnnnnctatccttgcaccctttgaaacaaatatacagtctttcaaaatgtggacagaaaactgc |
745 |
Q |
| |
|
| || ||||| | |||||||| | |||||| || ||||| ||||| |||| ||||||||||||| |||| ||||| ||| | |||||||| |
|
|
| T |
23706151 |
agcatccatctaacccaataataggcctacacttaaaaaaactatctttgcaggcttttaaacaaatatacatcctttggaaatgaggatataaaactgc |
23706250 |
T |
|
| Q |
746 |
tccagg |
751 |
Q |
| |
|
|||||| |
|
|
| T |
23706251 |
tccagg |
23706256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 664
Target Start/End: Original strand, 24747286 - 24747434
Alignment:
| Q |
516 |
agctccaagaaccacttctaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcga |
615 |
Q |
| |
|
||||| |||||||| ||| | || || || ||||||||||| || ||||| | || |||||||| || || ||||| |||||| | ||||| ||||| | |
|
|
| T |
24747286 |
agctctaagaaccatttccaggactctttagtctctccttcaacaacagcccatgcaattggaagtatttggtcatttggatccataccaatggcagcca |
24747385 |
T |
|
| Q |
616 |
gcaacttcccaccatagtaacccttcaggaaacaaccatcaagcccaat |
664 |
Q |
| |
|
||||| | |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24747386 |
gcaacattccaccataaggtcccttaaggaaacaaccatcaagcccaat |
24747434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 23705684 - 23705755
Alignment:
| Q |
184 |
cacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccaca |
255 |
Q |
| |
|
|||| ||||| || ||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
23705684 |
cactaatatcttttatctctttcattacatcaaggaatgcattctcataagtagcttttgctgccctccaca |
23705755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 23705794 - 23705864
Alignment:
| Q |
295 |
aagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaa |
365 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||| || ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
23705794 |
aagttattgtaaaggtgtctgacacaaaatctttgttctacatccggtagtagttcatccatagcaggcaa |
23705864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 613
Target Start/End: Original strand, 15811529 - 15811696
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
||||||||| || ||||| || | ||| ||||| || | |||||| | ||||| |||||||| || ||||||||||| ||||| | | | ||||| || |
|
|
| T |
15811529 |
taccttttgctgatcacttattatagtataagttttgcgcagtctggtgccaccaaaatcagctatgagaagctccaaaaaccattcccatgattcttta |
15811628 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagc |
613 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||| || || |||||||||||| ||||||| ||||| |
|
|
| T |
15811629 |
gtctctccttccacaagagcatatgcaattggaagtatttggtcattaggatccattccaattgcagc |
15811696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 612
Target Start/End: Complemental strand, 27654936 - 27654771
Alignment:
| Q |
446 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
545 |
Q |
| |
|
||||||||| || |||||||| | ||||||||| || || ||||| | ||||| | || ||| || ||||||||||| ||||| | | ||||| || |
|
|
| T |
27654936 |
taccttttgctgatcactaattatagtgtaagttttgcaaagtctagtgccaccaagattagctatgagaagctccaaaaaccatgttcatgattcttta |
27654837 |
T |
|
| Q |
546 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
612 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| || || |||||||||||| ||||||| |||| |
|
|
| T |
27654836 |
ttctctccttccacgatagcataagcaattggaagtat-tggtcattaggatccattccaattgcag |
27654771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 564 - 664
Target Start/End: Original strand, 19011915 - 19012015
Alignment:
| Q |
564 |
gcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcaggaaacaaccatcaagcccaa |
663 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||| || || || || ||||| |||||||| |||| |
|
|
| T |
19011915 |
gcatatgcaattggtagcatttgatcattaggatcccttccaatagcagccagcagctgaccaccataataccctttgagaaaacatccatcaaggccaa |
19012014 |
T |
|
| Q |
664 |
t |
664 |
Q |
| |
|
| |
|
|
| T |
19012015 |
t |
19012015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 29018 - 29118
Alignment:
| Q |
181 |
cttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccagg |
280 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||||| | | |||||||||||| ||||| || ||||| || ||||| |
|
|
| T |
29018 |
cttcactaatatctttgatctccttcatagcatctttgaaagcattatcataagttgccctggttgccctccacattaactctttcaacttcttaccagg |
29117 |
T |
|
| Q |
281 |
a |
281 |
Q |
| |
|
| |
|
|
| T |
29118 |
a |
29118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 613
Target Start/End: Original strand, 1261 - 1379
Alignment:
| Q |
495 |
ccacctaaatcagcaattagaagctccaagaaccacttctaa-gattccttggtctctccttccaccacagcataagctattggaagcatctgatcatta |
593 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| |||| | ||||| || ||||||||||| || ||| |||| || |||||||| || || |||||| |
|
|
| T |
1261 |
ccacccaaatcagcaatgagaagctccaaaaacca-ttctcatgattctttagtctctccttcaacaacatcatatgcaattggaagtatttggtcatta |
1359 |
T |
|
| Q |
594 |
ggatcccttccaatagcagc |
613 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
1360 |
ggatccattccaattgcagc |
1379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 20067505 - 20067397
Alignment:
| Q |
1 |
ccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaa |
100 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||||||||||| || ||| | ||||| || ||||||||||||| || ||||||||||| ||||| |
|
|
| T |
20067505 |
ccatcaaatacactctaatgtcttcacacatcgtcaccactggttttgatcttggaatgatgatggttgagttaaatgcttcggacatgttattaaccaa |
20067406 |
T |
|
| Q |
101 |
agtgtcaca |
109 |
Q |
| |
|
|| ||||| |
|
|
| T |
20067405 |
tgtatcaca |
20067397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 664
Target Start/End: Original strand, 24329797 - 24329922
Alignment:
| Q |
539 |
ttccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaaccc |
638 |
Q |
| |
|
|||||| ||||| ||||| || |||||||| || || || ||||| |||||||| ||||| | |||||||||| || | | ||| ||||||||||| |
|
|
| T |
24329797 |
ttcctttgtctccccttcaacaacagcatatgcaatgggtagcatttgatcatttggatctgtaccaatagcagttagaagttgcccgccatagtaacct |
24329896 |
T |
|
| Q |
639 |
ttcaggaaacaaccatcaagcccaat |
664 |
Q |
| |
|
|||| |||||| ||||| |||||||| |
|
|
| T |
24329897 |
ttcaagaaacacccatctagcccaat |
24329922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University